Research article

Parameters for accurate genome alignment

Martin C Frith¹^*, Michiaki Hamada^1,² and Paul Horton¹

¹ Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo 135-0064, Japan

² Mizuho Information & Research Institute, Inc. 2-3 Kanda-Nishikicho, Chiyoda-ku, Tokyo 101-8443, Japan

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BMC Bioinformatics 2010, 11:80 doi:10.1186/1471-2105-11-80

Published: 9 February 2010

Additional file 1:

Supplementary document. Three tables and nine figures.

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Additional file 2:

Supplementary data. Score parameter combinations, their statistical parameters λ and K, and alignment accuracy results.

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Additional file 3:

LAST version 94. Source code and documentation.

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