Table 1

Comparison of related software.

Name

Search

Registration

Visualization

Comparison

Atlas

Extendible


JAtlas Viewer

None

None

Single 3D image and surface view; oblique image view; segmented surfaces

None

View labels as text and segmented color; label selection; hierarchy view;

No

MIPAV

None

B-spline; Landmark; Cost optimization

3D and orthogonal views; oblique view; volume rendering

Juxtapose Image sets (no over- lay); Synchronized view

None

PlugInAlgorithm; PlugInFile; PlugInView

Slicer

QueryAtlas Module (publication search only)

Linear Module; Register Images Module

3D and orthogonal views; oblique view; volume rendering

Overlay image sets; view image sets together in 3D space

Overlay labels as image (only label ID available)

Modules


Comparison of cross-platform, free open-source software for search, registration, image comparison, atlas viewing, and extensibility features.

Lee et al. BMC Bioinformatics 2010 11:608   doi:10.1186/1471-2105-11-608

Open Data