Table 14

Relative ranking of complex detection algorithms on unscored and affinity-scored networks

PPI network

Wodak

MIPS

Aloy

Method

F1

Norm

F1

Norm

F1

Norm

Total

Norm


G+K

CMC

0.407

1.000

0.283

1.000

0.455

1.000

3.000

1.000

HACO

0.351

0.862

0.216

0.761

0.333

0.731

2.355

0.785

MCL-CAw

0.313

0.768

0.218

0.770

0.270

0.592

2.130

0.710

CORE

0.292

0.718

0.210

0.741

0.256

0.561

2.020

0.673

MCL

0.271

0.665

0.175

0.619

0.271

0.595

1.879

0.626

MCL-CA

0.244

0.601

0.212

0.749

0.278

0.610

1.960

0.653

COACH

0.183

0.450

0.137

0.486

0.194

0.426

1.361

0.454


ICD(G+K)

MCL-CAw

0.567

1.000

0.450

1.000

0.578

0.976

2.976

1.000

HACO

0.565

0.995

0.378

0.841

0.593

1.000

2.837

0.953

MCLO

0.533

0.939

0.412

0.916

0.572

0.965

2.820

0.947

CMC

0.531

0.936

0.403

0.897

0.480

0.810

2.642

0.888

MCL

0.498

0.879

0.370

0.822

0.543

0.916

2.616

0.879


FSW(G+K)

MCL-CAw

0.576

0.992

0.423

1.000

0.625

1.000

2.992

1.000

HACO

0.581

1.000

0.396

0.935

0.609

0.974

2.910

0.972

MCL

0.541

0.931

0.393

0.929

0.585

0.935

2.795

0.934

MCLO

0.513

0.884

0.376

0.888

0.612

0.979

2.750

0.919

CMC

0.484

0.833

0.338

0.798

0.465

0.744

2.375

0.794


Cons3.19

MCL-CAw

0.614

1.000

0.487

1.000

0.576

0.979

2.979

1.000

MCLO

0.606

0.986

0.471

0.967

0.575

0.977

2.930

0.984

CMC

0.604

0.982

0.479

0.983

0.588

1.000

2.965

0.995

MCL

0.573

0.932

0.407

0.836

0.567

0.964

2.732

0.917

HACO

0.475

0.774

0.379

0.777

0.502

0.854

2.405

0.807


Boot0.094

HACO

0.572

0.991

0.380

1.000

0.585

1.000

2.991

1.000

CMC

0.577

1.000

0.367

0.965

0.515

0.881

2.846

0.952

MCL-CAw

0.447

0.776

0.282

0.742

0.416

0.711

2.229

0.745

MCL

0.426

0.738

0.299

0.785

0.400

0.683

2.207

0.738

MCLO

0.424

0.736

0.267

0.701

0.392

0.670

2.108

0.705


Ranking obtained from normalized F1 values. The G+K network is unscored, while the remaining are scored using affinity scoring schemes.

Srihari et al. BMC Bioinformatics 2010 11:504   doi:10.1186/1471-2105-11-504

Open Data