Table 4

Total context bias in transposons and non-repeats, and subsets near or far from genes.

2 bp

3 bp

4 bp

5 bp


Real data

Transposon

1.2622e-2

2.5405e-3

1.8575e-3

1.7409e-3

Transposon, near

1.2981e-2

2.7622e-3

2.2495e-3

2.4520e-3

Transposon, far

1.1799e-2

2.4298e-3

1.6990e-3

1.3874e-3

Non-repeat

9.0816e-3

2.1532e-3

1.3989e-3

1.0385e-3

Non-repeat, near

7.5286e-3

2.1473e-3

1.4786e-3

1.2069e-3

Non-repeat, far

9.3789e-3

2.2102e-3

1.4290e-3

1.0287e-3

LINEs

9.7298e-3

2.1798e-3

1.4683e-3

1.1465e-3

SINEs

1.8042e-2

3.6693e-3

3.6117e-3

4.3391e-3

No-bias controls

Transposon

4.3907e-5

7.4125e-5

1.1806e-4

1.9323e-4

Transposon, near

7.4565e-5

1.7935e-4

3.1243e-4

5.0755e-4

Transposon, far

3.7193e-5

7.4758e-5

1.2081e-4

2.0596e-4

Non-repeat

3.1367e-5

7.1670e-5

1.1779e-4

1.9054e-4

Non-repeat, near

8.3869e-5

1.3339e-4

2.6857e-4

4.1832e-4

Non-repeat, far

4.1651e-5

7.3881e-5

1.2627e-4

1.8502e-4

LINEs

5.6367e-5

1.0365e-4

1.8279e-4

2.8490e-4

SINEs

7.2458e-5

1.4746e-4

2.4695e-4

3.9894e-4


Nevarez et al. BMC Bioinformatics 2010 11:462   doi:10.1186/1471-2105-11-462

Open Data