Additional file 3.
Table of top context bias values for 2-5 bp single substitution patterns. We calculated context bias values for all single substitution 2-5 bp patterns for our transposon dataset, and for 10 corresponding no bias control data sets. We used the no-bias controls to determine a p-value for each pattern in the real data. (The no-bias controls tell us how likely are we to get a score this high or higher if there were in reality no bias.) We then used the method of Benjamini and Hochberg, 1995 to identify the set of patterns with a false discovery rate of 0.001. Those patterns are given in this table.
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Nevarez et al. BMC Bioinformatics 2010 11:462 doi:10.1186/1471-2105-11-462