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Consistency, comprehensiveness, and compatibility of pathway databases

Donny Soh*, Difeng Dong, Yike Guo and Limsoon Wong

BMC Bioinformatics 2010, 11:449  doi:10.1186/1471-2105-11-449

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WikiPathways API

Alexander Pico   (2010-11-10 10:04)  Gladstone Institutes email

This is a nice comparative analysis of pathway databases. I would just point out that WikiPathways does in fact have an API. This can be used to extract pathway information in a much more efficient manner than presented in this article.

Details can be found here:
http://wikipathways.org/index.php/Help:WikiPathways_Webservice

And an open access article describing the web service can be found here:
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0006447

Competing interests

I am a developer for WikiPathways.

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