Table 7 |
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|
AUC and elapsed time for some motif (substructure) queries. |
||||||||
|
95% confidence interval |
||||||||
|
Query |
Method |
Platform |
Restarts |
Elapsed time |
AUC |
standard error |
lower |
upper |
|
|
||||||||
|
d1ubia_ |
SA |
GTX 285 |
128 |
00 m 03 s |
0.918 |
0.011 |
0.896 |
0.940 |
|
d1ubia_ |
SA |
CPU |
128 |
01 m 17 s |
0.912 |
0.011 |
0.890 |
0.935 |
|
d1ubia_ |
QP |
CPU |
- |
05 m 11 s |
0.902 |
0.012 |
0.879 |
0.926 |
|
d1ubia_ |
TOPS |
CPU |
- |
00 m 10 s |
0.894 |
0.012 |
0.870 |
0.918 |
|
|
||||||||
|
β-grasp |
SA |
CPU |
128 |
01 m 11 s |
0.939 |
0.010 |
0.920 |
0.958 |
|
β-grasp |
QP |
CPU |
- |
02 m 01 s |
0.938 |
0.010 |
0.918 |
0.957 |
|
β-grasp |
SA |
GTX 285 |
128 |
00 m 03 s |
0.934 |
0.010 |
0.914 |
0.954 |
|
β-grasp |
TOPS |
CPU |
- |
00 m 09 s |
0.847 |
0.014 |
0.819 |
0.875 |
|
|
||||||||
|
serpin B/C sheet |
SA |
GTX 285 |
128 |
00 m 03 s |
0.993 |
0.013 |
0.968 |
1.019 |
|
serpin B/C sheet |
SA |
CPU |
128 |
01 m 19 s |
0.991 |
0.015 |
0.962 |
1.021 |
|
serpin B/C sheet |
QP |
CPU |
- |
08 m 16 s |
0.986 |
0.019 |
0.949 |
1.023 |
|
serpin B/C sheet |
TOPS |
CPU |
- |
00 m 24 s |
0.491 |
0.054 |
0.385 |
0.597 |
|
|
||||||||
|
Area under the ROC curve (AUC) and elapsed time for some motif (substructure) queries on the ASTRAL SCOP 95% sequence identity non-redundant database. In the Method column, QP refers to the QP Tableau Search method, SA refers to SA Tableau Search. In the Platform column, either a GPU card is described, or CPU, which is a single core of an AMD Quad Core Opteron (2.3 GHz, 32 GB RAM) running Linux. The results for each query are sorted by AUC descending. |
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|
Stivala et al. BMC Bioinformatics 2010 11:446 doi:10.1186/1471-2105-11-446 |
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