Table 5

AUC and elapsed time in COPS benchmark data set.

95% confidence interval

Method

Platform

Restarts

Elapsed time

AUC

standard error

lower

upper


DaliLite

CPU

-

123 h 29 m 47 s

0.992

0.002

0.989

0.996

SHEBA

CPU

-

6 h 04 m 16 s

0.978

0.003

0.971

0.984

YAKUSA

CPU

-

0 h 02 m 25 s

0.975

0.003

0.969

0.982

SARF2

CPU

-

13 h 57 m 34 s

0.972

0.004

0.964

0.978

SA Tableau Search

CPU

4096

8 h 41 m 18 s

0.957

0.004

0.949

0.966

SA Tableau Search

GTX 285

4096

0 h 26 m 59 s

0.957

0.004

0.949

0.966

SA Tableau Search

Tesla C1060

4096

0 h 30 m 30 s

0.957

0.004

0.948

0.965

LOCK2

CPU

-

72 h 11 m 06 s

0.954

0.005

0.945

0.962

SA Tableau Search

CPU

128

0 h 15 m 17 s

0.951

0.005

0.942

0.960

VAST

CPU

-

1 h 37 m 53 s

0.950

0.005

0.941

0.959

SA Tableau Search

Tesla C1060

128

0 h 03 m 00 s

0.948

0.005

0.939

0.958

SA Tableau Search

GTX 285

128

0 h 03 m 02 s

0.947

0.005

0.938

0.957

QP Tableau Search

CPU

-

74 h 47 m 43 s

0.925

0.006

0.914

0.936

TOPS

CPU

-

0 h 18 m 25 s

0.881

0.007

0.868

0.894

IR Tableau

CPU

-

< 1 s

0.845

0.008

0.831

0.860

TableauSearch

CPU

-

0 h 18 m 07 s

0.840

0.008

0.825

0.855


Area under the ROC curve (AUC) and elapsed time for different methods on the COPS benchmark data set. The table is sorted by AUC descending. In the Platform column, either a GPU card is described, or CPU, which is a single core of an AMD Quad Core Opteron (2.3 GHz, 32 GB RAM) running Linux.

Stivala et al. BMC Bioinformatics 2010 11:446   doi:10.1186/1471-2105-11-446

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