Table 2

ΔAUC relative to SA Tableau Search for 200 queries in the ASTRAL 95% data set.

Method(s)

ΔAUC


SA Tableau Search 4096, SHEBA, SA Tableau Search 8192

0.000

SA Tableau Search 2048

0.0007

SA Tableau Search 1024

0.0012

SA Tableau Seach 512

0.0023

SA Tableau Search 256

0.0039

SA Tableau Search 128

0.0090

QP Tableau Search

0.0160

LOCK2

0.0183

TableauSearch

0.0723

VAST

0.0746

TOPS

0.0756

IR Tableau

0.0761

YAKUSA

0.1034


Difference in AUC relative to SA Tableau Search (4096 restarts) for different methods on the 200 query set against the ASTRAL SCOP 95% sequence identity non-redundant database. The table is sorted by ΔAUC, so that methods with lower AUC than SA Tableau Search (ΔAUC > 0, with p-value < 0.05) are at the bottom of the table. Methods for which there is no statistically significant difference in AUC from SA Tableau Search (4096 restarts) at p-value 0.05 are shown in a single row with ΔAUC = 0.000.

Stivala et al. BMC Bioinformatics 2010 11:446   doi:10.1186/1471-2105-11-446

Open Data