The workflow of TF-finder package. Automated package that can recognize transcription regulators controlling a biological process with three inputs: positive TFs, all TFs, and positive targets. ICE: Intersection of Coexpression (ICE) Analysis is integrated into this package for comparison. The package was developed with R, but is called from Perl in Unix /Linux environment. Pre-installation of Eisen's k-means cluster  is necessary for auto-clustering analysis.
Cui et al. BMC Bioinformatics 2010 11:425 doi:10.1186/1471-2105-11-425