Figure 2.

The workflow of TF-finder package. Automated package that can recognize transcription regulators controlling a biological process with three inputs: positive TFs, all TFs, and positive targets. ICE: Intersection of Coexpression (ICE) Analysis is integrated into this package for comparison. The package was developed with R, but is called from Perl in Unix /Linux environment. Pre-installation of Eisen's k-means cluster [45] is necessary for auto-clustering analysis.

Cui et al. BMC Bioinformatics 2010 11:425   doi:10.1186/1471-2105-11-425
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