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Open Access Highly Accessed Methodology article

TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base

Xiaoqi Cui1, Tong Wang2, Huann-Sheng Chen13, Victor Busov23 and Hairong Wei23*

Author Affiliations

1 Department of Mathematical Science, Michigan Technological University, 1400 Townsend Drive, Houghton, MI 49931, USA

2 School of Forest Resources and Environmental Science, Michigan Technological University, 1400 Townsend Drive, Houghton, MI 49931, USA

3 Biotechnology Research Center, Michigan Technological University, 1400 Townsend Drive, Houghton, MI 49931, USA

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BMC Bioinformatics 2010, 11:425  doi:10.1186/1471-2105-11-425

Published: 12 August 2010

Additional files

Additional file 1:

Positive target genes and positive TFs used for testing TF-finder. This is a Microsoft Excel file (.xls) that can be visualized using the Excel contained in Microsoft Office package.

Format: XLS Size: 58KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Novel TFs recognized by TF-finder. This is a Microsoft Excel file (.xls) that can be visualized using the Excel contained in Microsoft Office package.

Format: XLS Size: 411KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Comparison of TFs recognized by TF-finder and ICE. This is a Microsoft Excel file (.xls) that can be visualized using the Excel contained in Microsoft Office package.

Format: XLS Size: 35KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data