Research article
Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model
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* Corresponding author: Andrew J Bordner bordner.andrew@mayo.edu
1 Mayo Clinic, 13400 East Shea Boulevard, Scottsdale, AZ 85259, USA
2 School of Mathematical and Statistical Sciences, Arizona State University, P.O. Box 871804, Tempe, AZ 85287, USA
BMC Bioinformatics 2010, 11:41 doi:10.1186/1471-2105-11-41
Published: 20 January 2010Additional files
Additional file 1:
Detailed description of the algorithm for creating cross-validation data sets with minimal peptide sequence overlap.
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Additional file 2:
This zip archive contains tab-separated files with the 5-fold cross-validation sets for 16 different MHC allotypes created for this study and also a separate text file describing the table format.
Format: ZIP Size: 270KB Download file
Additional file 3:
Tables S1-S3 present the prediction results for the IEDB benchmark sets from El-Manzawaly et al. 2008 [26]. Prediction accuracies are given for RTA as well as the three prediction methods studied in that paper.
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