Results for exact and approximate tag sequence matching for the datasets from Nakamura et al. . TagCleaner detected the same tag sequences (5'-TGT GTT GGG TGT GTT TGG NNN NNN NNN N and NNN NNN NNN NCC AAA CAC ACC CAA CAC A-3') in the sequences from nasal (F1 - F3) and fecal samples (N1 - N5). The fraction of sequences that contained tag sequences with no mismatches and 1-3 mismatches is shown for the 5'-end, 3'-end and the concatenated tag sequences.
Schmieder et al. BMC Bioinformatics 2010 11:341 doi:10.1186/1471-2105-11-341