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Open Access Methodology article

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

Sophie S Abby, Eric Tannier, Manolo Gouy and Vincent Daubin*

Author Affiliations

Université de Lyon; Université Lyon 1; CNRS; INRIA; UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, 43 boulevard du 11 novembre 1918, F-69622 Villeurbanne, France

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BMC Bioinformatics 2010, 11:324  doi:10.1186/1471-2105-11-324

Published: 15 June 2010

Additional files

Additional file 1:

The 330 simulated alignments and corresponding gene trees (true and ML) along with the 40-taxa reference species tree.

Format: ZIP Size: 1.6MB Download file

Open Data

Additional file 2:

True positives (transfer events) with a 0.60 threshold for EEEP, Prunier and RIATA-HGT. For detailed legend see Fig. 2.

Format: PDF Size: 33KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

False positives (transfer events) with a 0.60 threshold for EEEP, Prunier and RIATA-HGT. For detailed legend see Fig. 2.

Format: PDF Size: 6KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Proportion of correct complete scenarios with a 0.60 threshold for EEEP, Prunier and RIATA-HGT. For detailed legend see Fig. 3.

Format: PDF Size: 24KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data