Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

Open Access Highly Accessed Software

A high-level 3D visualization API for Java and ImageJ

Benjamin Schmid1*, Johannes Schindelin2, Albert Cardona3, Mark Longair4 and Martin Heisenberg1

Author Affiliations

1 Department of Neurobiology and Genetics, Biocenter, University of Würzburg, Am Hubland, Würzburg, Germany

2 Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, Dresden, Germany

3 Institute of Neuroinformatics, Uni/ETH Zürich, Winterthurerstrasse 190, Zürich, Switzerland

4 School of Informatics, University of Edinburgh,10 Crichton Street, Edinburgh, UK

For all author emails, please log on.

BMC Bioinformatics 2010, 11:274  doi:10.1186/1471-2105-11-274

Published: 21 May 2010

Additional files

Additional file 1:

Supplementary material. Top, demonstration of landmark selection in two different adult Drosophila brains, for the purpose of landmark-based image volume registration. Bottom, source code example implementing the dendritic growth simulation shown in Figure 4 of the main manuscript.

Format: PDF Size: 526KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Direct volume editing. A movie which shows the result of the simulated dendritic growth. The corresponding source code is presented in Additional file 1, section 2.

Format: MPEG Size: 1.9MB Download file

Playing the movie within this page requires QuickTime 6.4 or later and JavaScript. Read more

Open Data

Additional file 3:

Basic usage. A movie which demonstrates the basic usage of the ImageJ plugin provided by our framework. More screen casts are available on our web page.

Format: MPEG Size: 18.9MB Download file

Playing the movie within this page requires QuickTime 6.4 or later and JavaScript. Read more

Open Data

Additional file 4:

Software. The JAR archive, containing both binary classes and the Java source code of our software. To install the software, this file must be copied into ImageJ's plugins directory.

Format: ZIP Size: 677KB Download file

Open Data