Software
A high-level 3D visualization API for Java and ImageJ
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* Corresponding author: Benjamin Schmid b.schmid@biozentrum.uni-wuerzburg.de
1 Department of Neurobiology and Genetics, Biocenter, University of Würzburg, Am Hubland, Würzburg, Germany
2 Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, Dresden, Germany
3 Institute of Neuroinformatics, Uni/ETH Zürich, Winterthurerstrasse 190, Zürich, Switzerland
4 School of Informatics, University of Edinburgh,10 Crichton Street, Edinburgh, UK
BMC Bioinformatics 2010, 11:274 doi:10.1186/1471-2105-11-274
Published: 21 May 2010Additional files
Additional file 1:
Supplementary material. Top, demonstration of landmark selection in two different adult Drosophila brains, for the purpose of landmark-based image volume registration. Bottom, source code example implementing the dendritic growth simulation shown in Figure 4 of the main manuscript.
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Direct volume editing. A movie which shows the result of the simulated dendritic growth. The corresponding source code is presented in Additional file 1, section 2.
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Basic usage. A movie which demonstrates the basic usage of the ImageJ plugin provided by our framework. More screen casts are available on our web page.
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Additional file 4:
Software. The JAR archive, containing both binary classes and the Java source code of our software. To install the software, this file must be copied into ImageJ's plugins directory.
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