Table 1

Chem2Bio2RDF datasets: some data sources map to multiple RDF resources.

Database

Resource name

Number of RDF triples


PubChem Compound

compound

233852


PubChem BioAssay

pubchem_bioassay

1715247


ChEBI

chebi

2237330


KEGG

kegg_ligand

96000


KEGG

kegg_interaction

70029


KEGG

kegg_pathway_protein

84760


CTD

ctd_interaction

2443826


CTD

ctd_chem_disease

2025513


BindingDB

bindingdb_ligand

223818


BindingDB

bindingdb_interaction

800016


PharmGKB

pharmgkb_drugs

14760


PharmGKB

Pharmgkb_genes

340808


PharmGKB

pharmgkb_relations

73276


PharmGKB

pharmgkb_diseases

9591


DrugBank

drugbank_drug

47640


DrugBank

drugbank_interaction

111001


Public QSAR sets

qsar

27269


MATADOR

matador

253488


UNIPROT

uniprot

34951


HPRD

hprd

408177


Reactome

reactome

21985


DIP

dip

1113840


OMIM

omim

23432


SIDER

sider

305510


PubMed

pubmed2compound

269178


Chen et al. BMC Bioinformatics 2010 11:255   doi:10.1186/1471-2105-11-255

Open Data