Table 7

Neuroblastoma data: Variability of log geometric means based on optimal gene subsets identified by various methods

Set Size

Method

Optimal set

Variance logGM

Std Dev logGM


2

Vand

GAPDH, HPRT

0.327

0.572

2

Szabo

GAPDH, SDHA

0.374

0.612

2

New

GAPDH, YWHAZ

0.250

0.500

3

Old1

GAPDH, HPRT, SDHA

0.348

0.590

3

New

ACTB, GAPDH, YWHAZ

0.255

0.505

4

Old1

GAPDH, HPRT, SDHA, UBC

0.361

0.601

4

New

ACTB, B2M, GAPDH, TBP

0.231

0.480

5

Old1

GAPDH, HPRT, SDHA, UBC, HMBS

0.358

0.598

5

New

ACTB, B2M, GAPDH, HPRT1, RPL13A

0.224

0.473

6

Old1

GAPDH, HPRT, SDHA, UBC, HMBS, YWHAZ

0.319

0.565

6

New

ACTB, GAPDH, B2M, HPRT1, TBP, YWHAZ

0.227

0.477


1Same results using either the method of Vandesompele et al [4] or Szabo et al [9]

Chervoneva et al. BMC Bioinformatics 2010 11:253   doi:10.1186/1471-2105-11-253

Open Data