Table 3

Matches Among DUFs and DKFs.

Match Type

Sub-HMMs

Pfam HMMs

OL PROSITE/Sub-HMM

sub-DKF → DKF

28,794

6,571

689

sub-DKF → DUF

21,615

1,751

502

sub-DUF → DKF

6,798

5,487

0

sub-DUF → DUF

5,070

1,516

0

The table lists the numbers of sub-DKFs and sub-DUFs which matched in addition to their source families other DKF and DUF families. A sub-HMM is considered to have matched a Pfam 22.0 family if it scores greater than 0 on more than 50% of its members. The last column contains the counts of sub-HMMs that also overlapped with PROSITE motifs.

Horan et al. BMC Bioinformatics 2010 11:205   doi:10.1186/1471-2105-11-205