Table 1 |
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XML Tags |
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Ontology Term Mark-up |
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General Format |
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<named-content content-type="biolit" id="ncbo_id=X;term_id=Y:Z;term=Q;url=http://H"> Q </named-content> |
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Example with data |
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<named-content content-type="biolit" id="ncbo_id=38436;term_id=CL:0000031;term=neuroblast;url=http://bioportal.bioontology.org/ visualize/39004"> neuroblast </named-content> |
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Note: url=http://HHHis optional |
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Database Identifier Mark-up |
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General Format |
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<ext-link xlink:href="http://linktodatabase" ext-link-type="databaselabel"> DATABASEID </ext-link> |
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Example with data |
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<ext-link xlink:href=http://www.rcsb.org/pdb/explore/explore.do?structureId=1MU2 ext-link-type="pdb"> 1MU2 </ext-link> |
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Semantic data are marked up using tags from the NLM DTD http://dtd.nlm.nih.gov/ webcite. The <named-content/> and <ext-link/> tags are used for ontology terms and database identifiers, respectively. |
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Fink et al. BMC Bioinformatics 2010 11:103 doi:10.1186/1471-2105-11-103 |
