Table 2

Mean and standard deviation (SD) of AUC values with 13 different cross validation conditions.

Method

Parameter

Mean of AUC

SD of AUC


PageRank with Priors

Back probability = 0.01

0.73

0.0008


PageRank with Priors

Back probability = 0.05

0.78

0.0015


PageRank with Priors

Back probability = 0.1

0.8

0.0013


PageRank with Priors

Back probability = 0.3

0.8

0.0011


PageRank with Priors

Back probability = 0.5

0.8

0.0015


PageRank with Priors

Back probability = 0.7

0.8

0.0009


PageRank with Priors

Back probability = 0.9

0.79

0.0007


K-Step Markov

K = 1

0.7

0.096


K-Step Markov

K = 2

0.78

0.0005


K-Step Markov

K = 4

0.8

0.0024


K-Step Markov

K = 6

0.8

0.0009


HITS with Priors

Back probability = 0.3

0.8

0.0009


HITS with Priors

Back probability = 0.5

0.8

0.0004


Highlighted rows correspond to the best parameter value of each method.

Chen et al. BMC Bioinformatics 2009 10:73   doi:10.1186/1471-2105-10-73

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