Table 13

Performance of BioHEL on learning CN and RSA using the reduced PSSM representation

Dataset

Representation

Accuracy

#Rules

#expr. atts.

Run-time(h)

CN

PSSM

81.4 ± 0.4

269.5 ± 12.7

14.4 ± 3.1

31.4 ± 2.9

Reduced PSSM

80.8 ± 0.3

256.0 ± 12.1

12.9 ± 2.7

19.4 ± 1.7

SA

PSSM

78.5 ± 0.4

520.4 ± 15.3

13.9 ± 3.5

54.3 ± 4.2

Reduced PSSM

77.6 ± 0.4

493.5 ± 14.9

12.9 ± 3.3

34.3 ± 3.0

Bacardit et al. BMC Bioinformatics 2009 10:6   doi:10.1186/1471-2105-10-6