Table 5

Comparison between predictions made by our hypotheses (Table 4) and by [32] for the seven genes that they wet-experimentally tested.

Gene Name

Systematic Name

uORF's Position

uORF's Length

Predicted as functional in


Z&D

This study


RPC11

YDR045C

-60

4

Yes

Yes

TPK1

YJL164C

-42

5

Yes

Yes

FOL1

YNL256W

-65

4

Yes

Yes

WSC3

YOL105C

-50

7

Yes

a

MKK1

YOR231W

-71

10

Yes

No


ECM7

YLR443W

-15

5

Nob

No

IMD4

YML056C

-99

14

Nob

No


a5' UTR length was predicted to be well over 1000 bases and thus this gene is not included in this study.

bZhang and Dietrich found these uORFs have little effect on translation; we consider them as non-functional.

Selpi et al. BMC Bioinformatics 2009 10:451   doi:10.1186/1471-2105-10-451

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