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## Figure 1.
(a) Input example sequence along with PSI-BLAST profile matrix of dimensions . (b) Example n × 20, with a residue circled to show the encoding stepswmer with w = 3 giving length seven with extracted features from the original PSI-BLAST matrix.
(c) Encoded vector of length 7 × 20 formed by linearizing the sub-matrix. (d) Flexible
encoding showing three residues in the center using the finer representation, and
two residues flanking the central residues on both sides using a coarser representation
as an averaging statistic. Length of this vector equals 5 × 20.
Rangwala |