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BLAST+: architecture and applications

Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer and Thomas L Madden*

Author Affiliations

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA

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BMC Bioinformatics 2009, 10:421  doi:10.1186/1471-2105-10-421

Published: 15 December 2009

Additional files

Additional file 1:

Eight tables list the command-line application options, as well as their types, default values, and a short explanation. The first table has information common to the search applications blastn, blastp, blastx, tblastn, and tblastx. The next five tables describe options for those applications. The last two tables list the options for makeblastdb (used to build a blast database) and blastdbcmd (used to read a database).

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