Table 1

Example annotation output

Verb

AGENT

THEME

LOCATION

activated

NifA: Activator

glnAP2: Gene

In Escherichia Coli: Wild_Type_Bacteria

encodes

GlnA: Gene

glutamine synthetase: Enzyme

For each verb, its separate arguments within the sentence are indicated, together with the biological concepts assigned to them. Each argument is also categorized according to the semantic roles assigned.

Thompson et al. BMC Bioinformatics 2009 10:349   doi:10.1186/1471-2105-10-349