Table 5

Top 20 expressed miRNAs in Arabidopsis under Mock, BaMV and BaMV+BSF4 conditions obtained with miRExpress and BLAST search of genomic sequences.

miRExpress

BLAST


microRNA ID

Mock

BaMV

BaMV+ satBaMV

Mock

BaMV

BaMV+satBaMV (count)


ath-miR158a

178,820

105,649

59,682

178,820

105,649

59,682

ath-miR157

(a, b, c)

103,140

46,113

17,695

103,140

46,113

17,695

ath-miR166

(a, b, c, d, e, f. g)

92,819

67,641

48,087

92,819

67,641

48,087

ath-miR156

(a, b, c, d, e, f)

63,539

36,906

24,926

63,539

36,906

24,926

ath-miR167(a, b)

29,899

30,542

7,712

29,899

30,542

7,712

ath-miR168(a, b)

8,630

5,533

2,599

8,630

5,533

2,599

ath-miR172(a, b)

6,805

5,438

898

6,805

5,438

898

ath-miR391

6,139

6,466

2,625

6,139

6,466

2,625

ath-miR173

4,523

2,973

545

4,523

2,973

545

ath-miR161.2

2,687

1,112

318

2,687

1,112

318

ath-miR164c

1,178

1,818

501

1,178

1,818

501

ath-miR164(a, b)

1,155

1,797

479

1,155

1,797

479

ath-miR165(a, b)

1,083

1,125

740

1,083

1,125

740

ath-miR390(a, b)

936

1,152

533

936

1,152

533

ath-miR159a

910

744

230

910

744

230

ath-miR408

829

658

265

829

658

265

ath-miR163

720

766

282

720

766

282

ath-miR822

470

207

95

470

207

95

ath-miR396a

448

312

62

448

312

62

ath-miR167d

446

361

67

446

361

67


Wang et al. BMC Bioinformatics 2009 10:328   doi:10.1186/1471-2105-10-328

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