Table 2

Comparison of BSMAP and other mapping algorithms

Speed reads/sec/CPU core)

Uniquely Aligned Reads (%)


BSMAP

146

44.9%

Cokus Alignment [4]

~25 [4]

45.1%

Meissner mapping [2]

83*

39.1%

Lister mapping [3]

125*

42.5%


* estimated speed based on SOAP, excluding the post processing time.

Xi and Li BMC Bioinformatics 2009 10:232   doi:10.1186/1471-2105-10-232

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