Table 6 |
||||
|
Few SDDIs overlap with PPINs derived from high-throughput experiments and MIPS complexes. |
||||
|
SDDI |
Gavin06-MATRIX |
Gavin06- SPOKE |
Krogan06 |
|
|
|
||||
|
SDDIs total with both proteins in MIPS and PPIN |
SCOPPI a |
71 |
71 |
238 |
|
Threading b |
3404 |
3404 |
9615 |
|
|
SDDIs supported by PPIs in both MIPS and PPIN |
SCOPPI |
14 |
9 |
25 |
|
Threading |
61 |
56 |
99 |
|
|
SDDIs supported by PPIs in MIPS but not PPIN |
SCOPPI |
0 |
5 |
5 |
|
Threading |
20 |
25 |
107 |
|
|
SDDIs supported by PPIs in PPIN but not MIPS |
SCOPPI |
37 |
30 |
48 |
|
Threading |
144 |
72 |
131 |
|
|
SDDIs supported by PPIs in neither PPIN nor MIPS |
SCOPPI |
20 |
27 |
160 |
|
Threading |
3179 |
3251 |
9278 |
|
|
|
||||
|
a protein-SCOP > 90 conf. b protein-SCOP CERTAIN conf. |
||||
|
Andreopoulos et al. BMC Bioinformatics 2009 10:196 doi:10.1186/1471-2105-10-196 |
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