Table 4

Comparison with other methods

Method

Dataset: number(domain definition)

Recall boundary

Precision boundary

Recall single

Precision single


This study

967(SCOP)

50.8%

38.7%

80.3%

78.1%


Random

967(SCOP)

17.6%

24.5%

-

-


ChopNet

2127(SCOP) + 1300(CATH)

46 - 51%

-

73%

-


DOMAC

156 Holland [48]

27%

14%

88.5

46.5


DGS

1236(CDD) [49]

50%

-

-

-


SnapDragon

414(Taylor) [13]

42.3%

39.8%

47%

-


Armadillo

585(CATH + V AST + SCOP)

37%

36%

-

-


Results for some other methods on their datasets compared to the overall ab initio results in this study.

See text for method citations.

Walsh et al. BMC Bioinformatics 2009 10:195   doi:10.1186/1471-2105-10-195

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