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Open Access Highly Accessed Database

ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature

Andrew G McDonald1*, Sinéad Boyce1, Gerard P Moss2, Henry BF Dixon3 and Keith F Tipton1

Author Affiliations

1 School of Biochemistry and Immunology, Trinity College, Dublin 2, Ireland

2 Department of Chemistry, Queen Mary University of London, London, UK

3 King's College, Cambridge, UK

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BMC Biochemistry 2007, 8:14  doi:10.1186/1471-2091-8-14

Published: 27 July 2007

Abstract

Background

We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases.

Description

The data, which are stored in a MySQL database, preserve the formatting of chemical and enzyme names. A simple, easy to use, web-based query interface is provided, along with an advanced search engine for more complex queries. The database is publicly available at http://www.enzyme-database.org webcite. The data are available for download as SQL and XML files via FTP.

Conclusion

ExplorEnz has powerful and flexible search capabilities and provides the scientific community with the most up-to-date version of the IUBMB Enzyme List.