Table 7

Accuracy of prediction for the carboxyl sites. The accuracy was tested to the <2 to <0.5 ranges. The individual accuracy of the residues is given in the bottom two tables. Figures marked in bold indicate the greatest accuracy.
TOTAL (242)










AMBER
PARSE
MCCE
UHBD
PROPKA


%
%
%
%
%
<2
 26
 66.67
 20
 51.28
 30
 76.92
 30
 76.92
 34
 87.18
<1.5
 19
 48.72
 15
 38.46
 25
 64.10
 20
 51.28
 32
 82.05
<1
 10
 25.64
 10
 25.64
 17
 43.59
 8
 20.51
 26
 66.67
<0.5
 6
 15.38
 4
 10.26
 8
 20.51
 3
 7.69
 14
 35.90
SURFACE (209)










AMBER
PARSE
MCCE
UHBD
PROPKA


%
%
%
%
%
<2
 17
 62.96
 13
 48.15
 10
 70.37
 19
 70.37
 22
 81.48
<1.5
 10
 37.04
 8
 29.63
 16
 59.26
 11
 40.74
 20
 74.07
<1
 4
 14.81
 4
 14.81
 12
 44.44
 2
 7.41
 16
 59.26
<0.5
 2
 7.41
 1
 3.70
 5
 18.52
 0
 0.00
 10
 37.04
BURIED (33)










AMBER
PARSE
MCCE
UHBD
PROPKA


%
%
%
%
%
<2
 9
 75.00
 9
 75.00
 11
 91.67
 11
 91.67
 12
 100.00
<1.5
 9
 75.00
 7
 58.33
 9
 75.00
 9
 75.00
 12
 100.00
<1
 6
 50.00
 6
 50.00
 5
 41.67
 6
 50.00
 10
 83.33
<0.5
 4
 33.00
 3
 25.00
 3
 25.00
 3
 25.00
 4
 33.33

Davies et al. BMC Biochemistry 2006 7:18   doi:10.1186/1471-2091-7-18