Table 4

Overview of the prediction accuracy of the Large Dataset (404 Residues) II Three tables show the accuracy of the predictions to the measured pKexp within the ranges of <2 to <0.5. This is taken as the number of residues predicted within each range. Figure marked in bold indicate significant results (P = 0.05).
TOTAL (404)








AMBER
PARSE
MCCE
PROPKA


%
%
%
%
<2
 322
 80
 320
 79
 357
 88
 371
 92
<1.5
 283
 70
 282
 70
 328
 81
 354
 88
<1
 213
 53
 221
 55
 283
 70
 317
 78
<0.5
 108
 27
 139
 34
 168
 42
 195
 48
SURFACE (337)








AMBER
PARSE
MCCE
PROPKA


%
%
%
%
<2
 285
 85
 284
 84
 311
 92
 329
 98
<1.5
 255
 76
 253
 75
 290
 86
 317
 94
<1
 196
 58
 200
 59
 248
 74
 285
 85
<0.5
 98
 29
 132
 39
 151
 45
 184
 55
BURIED (66)








AMBER
PARSE
MCCE
PROPKA


%
%
%
%
<2
 37
 56
 36
 55
 46
 70
 42
 64
<1.5
 28
 42
 29
 44
 38
 58
 37
 56
<1
 17
 26
 21
 32
 35
 53
 32
 48
<0.5
 10
 15
 7
 11
 17
 26
 11
 17

Davies et al. BMC Biochemistry 2006 7:18   doi:10.1186/1471-2091-7-18