Search

5 result(s) for 'author#Federico M Goodsaid' within BMC

1. Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

   Genome-wide association studies (GWAS) aim to identify genetic variants (usually single nucleotide polymorphisms [SNPs]) across the entire human genome that are associated with phenotypic traits such as diseas...

   Authors: Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming Shi, Roger Perkins, Hong Fang, Joshua Xu, James J Chen, Tao Han, Jim Kaput, James C Fuscoe and Weida Tong

   Citation: BMC Bioinformatics 2008 9(Suppl 9):S17

   Content type: Proceedings Published on: 12 August 2008

   This article is part of a Supplement: Volume 9 Supplement 9

   • View Full Text
   • View PDF

2. The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

   Reproducibility is a fundamental requirement in scientific experiments. Some recent publications have claimed that microarrays are unreliable because lists of differentially expressed genes (DEGs) are not repr...

   Authors: Leming Shi, Wendell D Jones, Roderick V Jensen, Stephen C Harris, Roger G Perkins, Federico M Goodsaid, Lei Guo, Lisa J Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao…

   Citation: BMC Bioinformatics 2008 9(Suppl 9):S10

   Content type: Proceedings Published on: 12 August 2008

   This article is part of a Supplement: Volume 9 Supplement 9

   • View Full Text
   • View PDF

3. Proposed methods for testing and selecting the ERCC external RNA controls

   The External RNA Control Consortium (ERCC) is an ad-hoc group with approximately 70 members from private, public, and academic organizations. The group is developing a set of external RNA control transcripts t...

   Authors:

   Citation: BMC Genomics 2005 6:150

   Content type: Methodology article Published on: 2 November 2005

   • View Full Text
   • View PDF

4. Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential

   The acceptance of microarray technology in regulatory decision-making is being challenged by the existence of various platforms and data analysis methods. A recent report (E. Marshall, Science, 306, 630–631, 2004...

   Authors: Leming Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K Puri, Felix W Frueh, Federico M Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C Fuscoe, Z aAlex Xu, Tucker A Patterson, Huixiao Hong, Qian Xie…

   Citation: BMC Bioinformatics 2005 6(Suppl 2):S12

   Content type: Proceedings Published on: 15 July 2005

   This article is part of a Supplement: Volume 6 Supplement 2

   • View Full Text
   • View PDF

5. Microarray scanner calibration curves: characteristics and implications

   Microarray-based measurement of mRNA abundance assumes a linear relationship between the fluorescence intensity and the dye concentration. In reality, however, the calibration curve can be nonlinear.

   Authors: Leming Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K Puri, Hong Fang, Felix W Frueh, Federico M Goodsaid, Lei Guo, William S Branham, James J Chen, Z Alex Xu, Stephen C Harris, Huixiao Hong, Qian Xie…

   Citation: BMC Bioinformatics 2005 6(Suppl 2):S11

   Content type: Proceedings Published on: 15 July 2005

   This article is part of a Supplement: Volume 6 Supplement 2

   • View Full Text
   • View PDF