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18 result(s) for 'author#Vadim M. Govorun' within BMC

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  1. Tuberculosis (TB) poses a worldwide threat due to advancing multidrug-resistant strains and deadly co-infections with Human immunodeficiency virus. Today large amounts of Mycobacterium tuberculosis whole genome s...

    Authors: Ekaterina N Chernyaeva, Marina V Shulgina, Mikhail S Rotkevich, Pavel V Dobrynin, Serguei A Simonov, Egor A Shitikov, Dmitry S Ischenko, Irina Y Karpova, Elena S Kostryukova, Elena N Ilina, Vadim M Govorun, Vyacheslav Y Zhuravlev, Olga A Manicheva, Peter K Yablonsky, Yulia D Isaeva, Elena Y Nosova…
    Citation: BMC Genomics 2014 15:308
  2. An amendment to this paper has been published and can be accessed via the original article.

    Authors: Vladislav V. Babenko, Oleg V. Podgorny, Valentin A. Manuvera, Artem S. Kasianov, Alexander I. Manolov, Ekaterina N. Grafskaia, Dmitriy A. Shirokov, Alexey S. Kurdyumov, Dmitriy V. Vinogradov, Anastasia S. Nikitina, Sergey I. Kovalchuk, Nickolay A. Anikanov, Ivan O. Butenko, Olga V. Pobeguts, Daria S. Matyushkina, Daria V. Rakitina…
    Citation: BMC Genomics 2020 21:503

    The original article was published in BMC Genomics 2020 21:331

  3. Bacteria of the class Mollicutes underwent extreme reduction of genomes and gene expression control systems. Only a few regulators are known to date. In this work, we describe a novel group of transcriptional ...

    Authors: Gleb Y. Fisunov, Daria V. Evsyutina, Valentin A. Manuvera and Vadim M. Govorun
    Citation: BMC Microbiology 2017 17:26
  4. Protein degradation is a basic cell process that operates in general protein turnover or to produce bioactive peptides. However, very little is known about the qualitative and quantitative composition of a pla...

    Authors: Igor A Fesenko, Georgij P Arapidi, Alexander Yu Skripnikov, Dmitry G Alexeev, Elena S Kostryukova, Alexander I Manolov, Ilya A Altukhov, Regina A Khazigaleeva, Anna V Seredina, Sergey I Kovalchuk, Rustam H Ziganshin, Viktor G Zgoda, Svetlana E Novikova, Tatiana A Semashko, Darya K Slizhikova, Vasilij V Ptushenko…
    Citation: BMC Plant Biology 2015 15:87
  5. Cryptic peptides (cryptides) are small bioactive molecules generated via degradation of functionally active proteins. Only a few examples of plant cryptides playing an important role in plant defense have been...

    Authors: Igor Fesenko, Regina Azarkina, Ilya Kirov, Andrei Kniazev, Anna Filippova, Ekaterina Grafskaia, Vassili Lazarev, Victor Zgoda, Ivan Butenko, Olga Bukato, Irina Lyapina, Dmitry Nazarenko, Sergey Elansky, Anna Mamaeva, Vadim Ivanov and Vadim Govorun
    Citation: BMC Plant Biology 2019 19:9
  6. One of the most challenging tasks in genomic analysis nowadays is metagenomics. Biomedical applications of metagenomics give rise to datasets containing hundreds and thousands of samples from various body site...

    Authors: Dmitry Alexeev, Tanya Bibikova, Boris Kovarsky, Damir Melnikov, Alexander Tyakht and Vadim Govorun
    Citation: BioData Mining 2015 8:10
  7. DNA repair is essential for the maintenance of genome stability in all living beings. Genome size as well as the repertoire and abundance of DNA repair components may vary among prokaryotic species. The bacter...

    Authors: Alexey Y Gorbachev, Gleb Y Fisunov, Mark Izraelson, Darya V Evsyutina, Pavel V Mazin, Dmitry G Alexeev, Olga V Pobeguts, Tatyana N Gorshkova, Sergey I Kovalchuk, Dmitry E Kamashev and Vadim M Govorun
    Citation: BMC Genomics 2013 14:726
  8. Escherichia coli (E. coli) has been increasingly implicated in the pathogenesis of Crohn’s disease (CD). The phylogeny of E. coli isolated from Crohn’s disease patients (CDEC) was cont...

    Authors: Daria V. Rakitina, Alexander I. Manolov, Alexandra V. Kanygina, Sofya K. Garushyants, Julia P. Baikova, Dmitry G. Alexeev, Valentina G. Ladygina, Elena S. Kostryukova, Andrei K. Larin, Tatiana A. Semashko, Irina Y. Karpova, Vladislav V. Babenko, Ruzilya K. Ismagilova, Sergei Y. Malanin, Mikhail S. Gelfand, Elena N. Ilina…
    Citation: BMC Genomics 2017 18:544
  9. Human hepatoma HepG2 cells are used as an in vitro model of the human liver. High-throughput transcriptomic sequencing is an advanced approach for assessing the functional state of a tissue or cell type. However,...

    Authors: Alexander V Tyakht, Elena N Ilina, Dmitry G Alexeev, Dmitry S Ischenko, Alexey Y Gorbachev, Tatiana A Semashko, Andrei K Larin, Oksana V Selezneva, Elena S Kostryukova, Pavel A Karalkin, Igor V Vakhrushev, Leonid K Kurbatov, Alexander I Archakov and Vadim M Govorun
    Citation: BMC Genomics 2014 15:1108
  10. Salivary cell secretion (SCS) plays a critical role in blood feeding by medicinal leeches, making them of use for certain medical purposes even today.

    Authors: Vladislav V. Babenko, Oleg V. Podgorny, Valentin A. Manuvera, Artem S. Kasianov, Alexander I. Manolov, Ekaterina N. Grafskaia, Dmitriy A. Shirokov, Alexey S. Kurdyumov, Dmitriy V. Vinogradov, Anastasia S. Nikitina, Sergey I. Kovalchuk, Nickolay A. Anikanov, Ivan O. Butenko, Olga V. Pobeguts, Daria S. Matyushkina, Daria V. Rakitina…
    Citation: BMC Genomics 2020 21:331

    The Correction to this article has been published in BMC Genomics 2020 21:503

  11. Abnormal pre-mRNA splicing regulation is common in cancer, but the effects of chemotherapy on this process remain unclear.

    Authors: Ksenia S. Anufrieva, Victoria О. Shender, Georgij P. Arapidi, Marat S. Pavlyukov, Michail I. Shakhparonov, Polina V. Shnaider, Ivan O. Butenko, Maria A. Lagarkova and Vadim M. Govorun
    Citation: Genome Medicine 2018 10:49
  12. In recent years, the damage caused by bacterial pathogens to major crops has been increasing worldwide. Pseudomonas syringae is a widespread bacterial species that infects almost all major crops. Different P. syr...

    Authors: Rinat I. Sultanov, Georgij P. Arapidi, Svetlana V. Vinogradova, Vadim M. Govorun, Duglas G. Luster and Alexander N. Ignatov
    Citation: BMC Genomics 2016 17(Suppl 14):1010

    This article is part of a Supplement: Volume 17 Supplement 14

  13. Alcohol abuse has deleterious effects on human health by disrupting the functions of many organs and systems. Gut microbiota has been implicated in the pathogenesis of alcohol-related liver diseases, with its ...

    Authors: Veronika B. Dubinkina, Alexander V. Tyakht, Vera Y. Odintsova, Konstantin S. Yarygin, Boris A. Kovarsky, Alexander V. Pavlenko, Dmitry S. Ischenko, Anna S. Popenko, Dmitry G. Alexeev, Anastasiya Y. Taraskina, Regina F. Nasyrova, Evgeny M. Krupitsky, Nino V. Shalikiani, Igor G. Bakulin, Petr L. Shcherbakov, Lyubov O. Skorodumova…
    Citation: Microbiome 2017 5:141
  14. Proteomics of bacterial pathogens is a developing field exploring microbial physiology, gene expression and the complex interactions between bacteria and their hosts. One of the complications in proteomic appr...

    Authors: Dmitry Ischenko, Dmitry Alexeev, Egor Shitikov, Alexandra Kanygina, Maja Malakhova, Elena Kostryukova, Andrey Larin, Sergey Kovalchuk, Olga Pobeguts, Ivan Butenko, Nikolay Anikanov, Ilya Altukhov, Elena Ilina and Vadim Govorun
    Citation: BMC Bioinformatics 2016 17:450
  15. This study was aimed at deciphering the secretome of adipose-derived mesenchymal stromal cells (ADSCs) cultured in standard and hypoxic conditions to reveal proteins, which may be responsible for regenerative ...

    Authors: Natalia Kalinina, Daria Kharlampieva, Marina Loguinova, Ivan Butenko, Olga Pobeguts, Anastasia Efimenko, Luidmila Ageeva, George Sharonov, Dmitry Ischenko, Dmitry Alekseev, Olga Grigorieva, Veronika Sysoeva, Ksenia Rubina, Vassiliy Lazarev and Vadim Govorun
    Citation: Stem Cell Research & Therapy 2015 6:221
  16. Fecal microbiota transplantation (FMT) has been recently approved by FDA for the treatment of refractory recurrent clostridial colitis (rCDI). Success of FTM in treatment of rCDI led to a number of studies inv...

    Authors: Oleg V. Goloshchapov, Evgenii I. Olekhnovich, Sergey V. Sidorenko, Ivan S. Moiseev, Maxim A. Kucher, Dmitry E. Fedorov, Alexander V. Pavlenko, Alexander I. Manolov, Vladimir V. Gostev, Vladimir A. Veselovsky, Ksenia M. Klimina, Elena S. Kostryukova, Evgeny A. Bakin, Alexander N. Shvetcov, Elvira D. Gumbatova, Ruslana V. Klementeva…
    Citation: BMC Microbiology 2019 19:312
  17. MALINA is a web service for bioinformatic analysis of whole-genome metagenomic data obtained from human gut microbiota sequencing. As input data, it accepts metagenomic reads of various sequencing technologies...

    Authors: Alexander V Tyakht, Anna S Popenko, Maxim S Belenikin, Ilya A Altukhov, Alexander V Pavlenko, Elena S Kostryukova, Oksana V Selezneva, Andrei K Larin, Irina Y Karpova and Dmitry G Alexeev
    Citation: Source Code for Biology and Medicine 2012 7:13
  18. Crohn’s disease is associated with gut dysbiosis. Independent studies have shown an increase in the abundance of certain bacterial species, particularly Escherichia coli with the adherent-invasive pathotype, in t...

    Authors: Alexander V. Tyakht, Alexander I. Manolov, Alexandra V. Kanygina, Dmitry S. Ischenko, Boris A. Kovarsky, Anna S. Popenko, Alexander V. Pavlenko, Anna V. Elizarova, Daria V. Rakitina, Julia P. Baikova, Valentina G. Ladygina, Elena S. Kostryukova, Irina Y. Karpova, Tatyana A. Semashko, Andrei K. Larin, Tatyana V. Grigoryeva…
    Citation: BMC Genomics 2018 19:968