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10 result(s) for 'author#Christian Höner zu Siederdissen' within BMC

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  1. Dynamic programming algorithms provide exact solutions to many problems in computational biology, such as sequence alignment, RNA folding, hidden Markov models (HMMs), and scoring of phylogenetic trees. Struct...

    Authors: Christian Höner zu Siederdissen, Sonja J Prohaska and Peter F Stadler
    Citation: BMC Bioinformatics 2015 16(Suppl 19):S2

    This article is part of a Supplement: Volume 16 Supplement 19

  2. Secondary structure forms an important intermediate level of description of nucleic acids that encapsulates the dominating part of the folding energy, is often well conserved in evolution, and is routinely use...

    Authors: Ronny Lorenz, Stephan H Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F Stadler and Ivo L Hofacker
    Citation: Algorithms for Molecular Biology 2011 6:26
  3. Genome sequences and genome annotation data have become available at ever increasing rates in response to the rapid progress in sequencing technologies. As a consequence the demand for methods supporting compa...

    Authors: Fabian Gärtner, Christian Höner zu Siederdissen, Lydia Müller and Peter F. Stadler
    Citation: Algorithms for Molecular Biology 2018 13:15
  4. Genomic DNA frequently undergoes rearrangement of the gene order that can be localized by comparing the two DNA sequences. In mitochondrial genomes different mechanisms are likely at work, at least some of whi...

    Authors: Marwa Al Arab, Matthias Bernt, Christian Höner zu Siederdissen, Kifah Tout and Peter F. Stadler
    Citation: Algorithms for Molecular Biology 2017 12:22
  5. Flow cytometry (FCM) is a powerful single-cell based measurement method to ascertain multidimensional optical properties of millions of cells. FCM is widely used in medical diagnostics and health research. The...

    Authors: Joachim Ludwig, Christian Höner zu Siederdissen, Zishu Liu, Peter F. Stadler and Susann Müller
    Citation: BMC Bioinformatics 2019 20:643
  6. Long non-coding RNAs (lncRNAs) play an important role in regulating gene expression and are thus important for determining phenotypes. Most attempts to measure selection in lncRNAs have focused on the primary ...

    Authors: Maria Beatriz Walter Costa, Christian Höner zu Siederdissen, Marko Dunjić, Peter F. Stadler and Katja Nowick
    Citation: BMC Bioinformatics 2019 20:151
  7. Commonly, sequence and structure elements are assumed to evolve congruently, such that homologous sequence positions correspond to homologous structural features. Assuming congruent evolution, alignments based on...

    Authors: Peter F. Stadler and Sebastian Will
    Citation: Algorithms for Molecular Biology 2022 17:10
  8. Transfer RNAs (tRNAs) are ubiquitous in all living organism. They implement the genetic code so that most genomes contain distinct tRNAs for almost all 61 codons. They behave similar to mobile elements and pro...

    Authors: Cristian A. Velandia-Huerto, Sarah J. Berkemer, Anne Hoffmann, Nancy Retzlaff, Liliana C. Romero Marroquín, Maribel Hernández-Rosales, Peter F. Stadler and Clara I. Bermúdez-Santana
    Citation: BMC Genomics 2016 17:617
  9. The function of RNA is strongly dependent on its structure, so an appropriate recognition of this structure, on every level of organization, is of great importance. One particular concern is the assessment of ...

    Authors: Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard Adamiak, Jacek Blazewicz and Marta Szachniuk
    Citation: BMC Bioinformatics 2015 16:276