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35 result(s) for 'author#Anthony T Papenfuss' within BMC

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  1. We present the genome sequence of the tammar wallaby, Macropus eugenii, which is a member of the kangaroo family and the first representative of the iconic hopping mammals that symbolize Australia to be sequenced...

    Authors: Marilyn B Renfree, Anthony T Papenfuss, Janine E Deakin, James Lindsay, Thomas Heider, Katherine Belov, Willem Rens, Paul D Waters, Elizabeth A Pharo, Geoff Shaw, Emily SW Wong, Christophe M Lefèvre, Kevin R Nicholas, Yoko Kuroki, Matthew J Wakefield, Kyall R Zenger…
    Citation: Genome Biology 2011 12:R81
    Content type: Research Published on:

    The Erratum to this article has been published in Genome Biology 2011 12:414

  2. The HOX gene clusters are thought to be highly conserved amongst mammals and other vertebrates, but the long non-coding RNAs have only been studied in detail in human and mouse. The sequencing of the kangaroo ...

    Authors: Hongshi Yu, James Lindsay, Zhi-Ping Feng, Stephen Frankenberg, Yanqiu Hu, Dawn Carone, Geoff Shaw, Andrew J Pask, Rachel O’Neill, Anthony T Papenfuss and Marilyn B Renfree
    Citation: BMC Genomics 2012 13:251
    Content type: Research article Published on:

  4. Authors: Marilyn B Renfree, Anthony T Papenfuss, Janine E Deakin, James Lindsay, Thomas Heider, Katherine Belov, Willem Rens, Paul D Waters, Elizabeth A Pharo, Geoff Shaw, Emily SW Wong, Christophe M Lefèvre, Kevin R Nicholas, Yoko Kuroki, Matthew J Wakefield, Kyall R Zenger…
    Citation: Genome Biology 2011 12:414
    Content type: Erratum Published on:

    The original article was published in Genome Biology 2011 12:R81

  5. Bats are the natural reservoir host for a range of emerging and re-emerging viruses, including SARS-like coronaviruses, Ebola viruses, henipaviruses and Rabies viruses. However, the mechanisms responsible for ...

    Authors: Anthony T Papenfuss, Michelle L Baker, Zhi-Ping Feng, Mary Tachedjian, Gary Crameri, Chris Cowled, Justin Ng, Vijaya Janardhana, Hume E Field and Lin-Fa Wang
    Citation: BMC Genomics 2012 13:261
    Content type: Research article Published on:

  6. Prostate cancer is caused by genomic aberrations in normal epithelial cells, however clinical translation of findings from analyses of cancer cells alone has been very limited. A deeper understanding of the tu...

    Authors: Stefano Mangiola, Patrick McCoy, Martin Modrak, Fernando Souza-Fonseca-Guimaraes, Daniel Blashki, Ryan Stuchbery, Simon P. Keam, Michael Kerger, Ken Chow, Chayanica Nasa, Melanie Le Page, Natalie Lister, Simon Monard, Justin Peters, Phil Dundee, Scott G. Williams…
    Citation: BMC Cancer 2021 21:846
    Content type: Research article Published on:

  8. Major histocompatibility complex (MHC) class I genes are found in the genomes of all jawed vertebrates. The evolution of this gene family is closely tied to the evolution of the vertebrate genome. Family membe...

    Authors: Anthony T Papenfuss, Zhi-Ping Feng, Katina Krasnec, Janine E Deakin, Michelle L Baker and Robert D Miller
    Citation: BMC Genomics 2015 16:535
    Content type: Research article Published on:

  9. The human microbiome plays an important role in cancer. Accumulating evidence indicates that commensal microbiome-derived DNA may be represented in minute quantities in the cell-free DNA of human blood and cou...

    Authors: Enrique Zozaya-Valdés, Stephen Q. Wong, Jeanette Raleigh, Athena Hatzimihalis, Sarah Ftouni, Anthony T. Papenfuss, Shahneen Sandhu, Mark A. Dawson and Sarah-Jane Dawson
    Citation: Genome Biology 2021 22:187
    Content type: Research Published on:

  10. The scabies mite, Sarcoptes scabiei, is a parasitic arachnid and cause of the infectious skin disease scabies in humans and mange in other animal species. Scabies infections are a major health problem, particular...

    Authors: Ehtesham Mofiz, Deborah C. Holt, Torsten Seemann, Bart J. Currie, Katja Fischer and Anthony T. Papenfuss
    Citation: GigaScience 2016 5:23
    Content type: Data Note Published on:

  11. Genomic imprinting is an epigenetic phenomenon that results in monoallelic gene expression. Many hypotheses have been advanced to explain why genomic imprinting evolved in mammals, but few have examined how it...

    Authors: Andrew J Pask, Anthony T Papenfuss, Eleanor I Ager, Kaighin A McColl, Terence P Speed and Marilyn B Renfree
    Citation: Genome Biology 2009 10:R1
    Content type: Research Published on:

  12. Cytokines are small proteins that regulate immunity in vertebrate species. Marsupial and eutherian mammals last shared a common ancestor more than 180 million years ago, so it is not surprising that attempts t...

    Authors: Emily SW Wong, Lauren J Young, Anthony T Papenfuss and Katherine Belov
    Citation: Immunome Research 2006 2:4
    Content type: Research Published on:

  13. The Major Histocompatibility Complex (MHC) is essential for immune function. Historically, it has been subdivided into three regions (Class I, II, and III), but a cluster of functionally related genes within t...

    Authors: Janine E Deakin, Anthony T Papenfuss, Katherine Belov, Joseph GR Cross, Penny Coggill, Sophie Palmer, Sarah Sims, Terence P Speed, Stephan Beck and Jennifer A Marshall Graves
    Citation: BMC Genomics 2006 7:281
    Content type: Research article Published on:

  14. Recently, efforts have been made toward the harmonization of transcriptomic data structures and workflows using the concept of data tidiness, to facilitate modularisation. We present tidybulk, a modular framew...

    Authors: Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A. Doyle and Anthony T. Papenfuss
    Citation: Genome Biology 2021 22:42
    Content type: Software Published on:

  15. The thymus plays a critical role in the development and maturation of T-cells. Humans have a single thoracic thymus and presence of a second thymus is considered an anomaly. However, many vertebrates have mult...

    Authors: Emily SW Wong, Anthony T Papenfuss, Andreas Heger, Arthur L Hsu, Chris P Ponting, Robert D Miller, Jane C Fenelon, Marilyn B Renfree, Richard A Gibbs and Katherine Belov
    Citation: BMC Genomics 2011 12:420
    Content type: Research article Published on:

  16. To understand the evolutionary origins of our own immune system, we need to characterise the immune system of our distant relatives, the marsupials and monotremes. The recent sequencing of the genomes of two m...

    Authors: Emily SW Wong, Anthony T Papenfuss and Katherine Belov
    Citation: BMC Immunology 2011 12:48
    Content type: Database Published on:

  17. High throughput sequencing requires bioinformatics pipelines to process large volumes of data into meaningful variants that can be translated into a clinical report. These pipelines often suffer from a number ...

    Authors: Kenneth D. Doig, Jason Ellul, Andrew Fellowes, Ella R. Thompson, Georgina Ryland, Piers Blombery, Anthony T. Papenfuss and Stephen B. Fox
    Citation: BMC Bioinformatics 2017 18:555
    Content type: Software Published on:

  18. Expressed sequence tags (ESTs) have been used for rapid gene discovery in a variety of organisms and provide a valuable resource for whole genome annotation. Although the genome of one marsupial, the opossum Mono...

    Authors: Michelle L Baker, Sandra Indiviglio, April M Nyberg, George H Rosenberg, Kerstin Lindblad-Toh, Robert D Miller and Anthony T Papenfuss
    Citation: BMC Genomics 2007 8:50
    Content type: Research article Published on:

  19. After publication of our article [1] it was brought to our attention that a line of code was missing from our program to combine the within-replicate variance and between-replicate variance. This led to an ove...

    Authors: Alan F. Rubin, Hannah Gelman, Nathan Lucas, Sandra M. Bajjalieh, Anthony T. Papenfuss, Terence P. Speed and Douglas M. Fowler
    Citation: Genome Biology 2018 19:17
    Content type: Correction Published on:

    The original article was published in Genome Biology 2017 18:150

  20. The malaria parasite Plasmodium falciparum has an unusually euchromatic genome with poorly conserved positioning of nucleosomes in intergenic sequences and poorly understood mechanisms of gene regulation. Variant...

    Authors: Jingyi Tang, Scott A. Chisholm, Lee M. Yeoh, Paul R. Gilson, Anthony T. Papenfuss, Karen P. Day, Michaela Petter and Michael F. Duffy
    Citation: Epigenetics & Chromatin 2020 13:50
    Content type: Research Published on: