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Selected papers from WABI 2018

Edited by Laxmi Parida and Esko Ukkonen

This collection of articles has not been sponsored and articles have undergone the journal’s standard peer-review process. The Guest Editors declare no competing interests.

View all collections published in Algorithms for Molecular Biology.

  1. Content type: Research

    We study the problem of identifying differentially mutated subnetworks of a large gene–gene interaction network, that is, subnetworks that display a significant difference in mutation frequency in two sets of ...

    Authors: Morteza Chalabi Hajkarim, Eli Upfal and Fabio Vandin

    Citation: Algorithms for Molecular Biology 2019 14:10

    Published on:

  2. Content type: Research

    With long reads getting even longer and cheaper, large scale sequencing projects can be accomplished without short reads at an affordable cost. Due to the high error rates and less mature tools, de novo assemb...

    Authors: Riku Walve, Pasi Rastas and Leena Salmela

    Citation: Algorithms for Molecular Biology 2019 14:8

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  3. Content type: Research

    Sequencing technologies produce larger and larger collections of biosequences that have to be stored in compressed indices supporting fast search operations. Many compressed indices are based on the Burrows–Wh...

    Authors: Lavinia Egidi, Felipe A. Louza, Giovanni Manzini and Guilherme P. Telles

    Citation: Algorithms for Molecular Biology 2019 14:6

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  4. Content type: Research

    Sequencing technologies keep on turning cheaper and faster, thus putting a growing pressure for data structures designed to efficiently store raw data, and possibly perform analysis therein. In this view, ther...

    Authors: Nicola Prezza, Nadia Pisanti, Marinella Sciortino and Giovanna Rosone

    Citation: Algorithms for Molecular Biology 2019 14:3

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  5. Content type: Research

    Absolute fast converging (AFC) phylogeny estimation methods are ones that have been proven to recover the true tree with high probability given sequences whose lengths are polynomial in the number of number of...

    Authors: Qiuyi Zhang, Satish Rao and Tandy Warnow

    Citation: Algorithms for Molecular Biology 2019 14:2

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  6. Content type: Research

    A key factor in computational drug design is the consistency and reliability with which intermolecular interactions between a wide variety of molecules can be described. Here we present a procedure to efficien...

    Authors: Martin S. Engler, Bertrand Caron, Lourens Veen, Daan P. Geerke, Alan E. Mark and Gunnar W. Klau

    Citation: Algorithms for Molecular Biology 2019 14:1

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