Skip to content

Advertisement

What do you think about BMC? Take part in

Selected papers from WABI 09

  1. Content type: Research

    Regulatory antisense RNAs are a class of ncRNAs that regulate gene expression by prohibiting the translation of an mRNA by establishing stable interactions with a target sequence. There is great demand for eff...

    Authors: Raheleh Salari, Rolf Backofen and S Cenk Sahinalp

    Citation: Algorithms for Molecular Biology 2010 5:5

    Published on:

  2. Content type: Research

    Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers successfully merge the overlapping ...

    Authors: Peter Husemann and Jens Stoye

    Citation: Algorithms for Molecular Biology 2010 5:3

    Published on:

  3. Content type: Research

    Proteins have evolved subject to energetic selection pressure for stability and flexibility. Structural similarity between proteins that have gone through conformational changes can be captured effectively if ...

    Authors: Saeed Salem, Mohammed J Zaki and Chris Bystroff

    Citation: Algorithms for Molecular Biology 2010 5:12

    Published on:

  4. Content type: Research

    This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first identifies frequently traversed network paths...

    Authors: Timothy Hancock and Hiroshi Mamitsuka

    Citation: Algorithms for Molecular Biology 2010 5:10

    Published on:

  5. Content type: Research

    Supertree methods comprise one approach to reconstructing large molecular phylogenies given multi-marker datasets: trees are estimated on each marker and then combined into a tree (the "supertree") on the enti...

    Authors: M Shel Swenson, François Barbançon, Tandy Warnow and C Randal Linder

    Citation: Algorithms for Molecular Biology 2010 5:8

    Published on:

  6. Content type: Research

    Functionally related genes tend to be correlated in their expression patterns across multiple conditions and/or tissue-types. Thus co-expression networks are often used to investigate functional groups of gene...

    Authors: Matthew Hansen, Logan Everett, Larry Singh and Sridhar Hannenhalli

    Citation: Algorithms for Molecular Biology 2010 5:4

    Published on:

  7. Content type: Research

    Supertree methods combine the phylogenetic information from multiple partially-overlapping trees into a larger phylogenetic tree called a supertree. Several supertree construction methods have been proposed to...

    Authors: Jianrong Dong, David Fernández-Baca and FR McMorris

    Citation: Algorithms for Molecular Biology 2010 5:2

    Published on:

  8. Content type: Research

    Segmental duplications, or low-copy repeats, are common in mammalian genomes. In the human genome, most segmental duplications are mosaics comprised of multiple duplicated fragments. This complex genomic organ...

    Authors: Crystal L Kahn, Shay Mozes and Benjamin J Raphael

    Citation: Algorithms for Molecular Biology 2010 5:11

    Published on:

  9. Content type: Research

    The fingerprint of a molecule is a bitstring based on its structure, constructed such that structurally similar molecules will have similar fingerprints. Molecular fingerprints can be used in an initial phase ...

    Authors: Thomas G Kristensen, Jesper Nielsen and Christian NS Pedersen

    Citation: Algorithms for Molecular Biology 2010 5:9

    Published on:

Advertisement