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Data Notes

At BMC Research Notes, we recognise that valuable data often go unpublished when instead they could be helping to progress science. This is why we launched Data notes: a short article type allowing researchers to describe their data, sharing them with the research community and receiving credit for all their work - not just a finished article.

We present here all the Data notes published in the journal, a free and open resource for the scientific community. Why not join them and free your data too?

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  1. Labeo catla (catla), one of the three Indian major carps, is native to the Indo-Gangetic riverine system of India as well as the rivers of Pakistan, Bangladesh, Nepal and Myanmar. Its higher growth rate and compa...

    Authors: Lakshman Sahoo, Paramananda Das, Bismay Sahoo, Gargee Das, Prem Kumar Meher, Uday Kumar Udit, Kanta Das Mahapatra and Jitendra Kumar Sundaray
    Citation: BMC Research Notes 2020 13:411
    Content type: Data note Published on:

  2. Efforts to restore tropical peat swamp forests in Indonesia face huge challenges of potential failures due to socio-economic factors and ecological dynamics attributed to lack of knowledge on the adaptive mech...

    Authors: Iskandar Zulkarnaen Siregar, Fifi Gus Dwiyanti, Ulfah Juniarti Siregar and Deden Derajat Matra
    Citation: BMC Research Notes 2020 13:405
    Content type: Data note Published on:

  3. Data was collected to evaluate the survival rates of head and neck (conjunctiva, oropharyngeal and non-oropharyngeal) squamous cell carcinomas in Ghana.

    Authors: Osei Owusu-Afriyie, W. K. B. A. Owiredu, Alexander Acheampong Oti, Emmanuel Acheampong, Kwabena Owusu-Danquah, Rita Larsen-Reindorf, Linda Ahenkorah Fondjo, Evans Asamoah Adu, Sampson Donkor and Peter Donkor
    Citation: BMC Research Notes 2020 13:392
    Content type: Data note Published on:

  4. Patients with end-stage heart failure (ESHF) treated with ventricular assist devices (VADs) tend to gain weight, which may prevent them from receiving heart transplantation (HT) if their body mass index (BMI) ...

    Authors: Adrian daSilva-deAbreu, Bader Aldeen Alhafez, Yuhamy Curbelo-Pena, Carl J. Lavie, Hector O. Ventura, Juan Francisco Loro-Ferrer and Stacy A. Mandras
    Citation: BMC Research Notes 2020 13:382
    Content type: Data note Published on:

  5. Pig pluripotent stem cells have tremendous potential because the pig is a valuable animal as both an agricultural resource and as a preclinical model of human therapy. To date, a lack of understanding of pig p...

    Authors: Kwang-Hwan Choi, Dong-Kyung Lee, Jong-Nam Oh, Seung-Hun Kim, Mingyun Lee, Sung Woo Kim and Chang-Kyu Lee
    Citation: BMC Research Notes 2020 13:144
    Content type: Data note Published on:

  6. The leading factors of paediatric, pedestrian road traffic injuries (PPRTIs) are associated with the characteristics of immediate environment. Spatial analysis of data related to PPRTIs could provide useful kn...

    Authors: Parinaz Tabari, Hamidreza Shabanikiya, Nasser Bagheri, Robert Bergquist, Soheil Hashtarkhani, Fatemeh Kiani, Alireza Mohammadi and Behzad Kiani
    Citation: BMC Research Notes 2020 13:363
    Content type: Data note Published on:

  8. Genome sequences are a vital resource for accelerating the biological exploration of an organism of interest. Pythium destruens (a synonym of Pythium insidiosum) causes a difficult-to-treat infectious disease cal...

    Authors: Theerapong Krajaejun, Weerayuth Kittichotirat, Preecha Patumcharoenpol, Thidarat Rujirawat, Tassanee Lohnoo and Wanta Yingyong
    Citation: BMC Research Notes 2020 13:329
    Content type: Data note Published on:

  9. Spiroplasma citri is a bacterium with a wide host range and is the causal agent of citrus stubborn and brittle root diseases of citrus and horseradish, respectively. S. citri is transmitted in a circulative, pers...

    Authors: Raymond Yokomi, Rachel Rattner, Fatima Osman, Yogita Maheshwari, Vijayanandraj Selvaraj, Deborah Pagliaccia, Jianchi Chen and Georgios Vidalakis
    Citation: BMC Research Notes 2020 13:320
    Content type: Data note Published on:

  10. Mouse models have delivered variable recapitulation of Kyasanur Forest disease (KFD) pathology and consistently demonstrated neurological involvement which may be a limited feature of human disease. With the p...

    Authors: A. M. Nikiforuk, K. Tierny, T. A. Cutts, D. K. Kobasa, S. S. Theriault and B. W. M. Cook
    Citation: BMC Research Notes 2020 13:291
    Content type: Data note Published on:

  11. Malaria is an infectious disease that annually presents around 200,000 cases in Brazil. The availability of data on malaria is crucial for enabling and supporting studies that can promote actions to prevent it...

    Authors: Lais Baroni, Marcel Pedroso, Christovam Barcellos, Rebecca Salles, Samella Salles, Balthazar Paixão, Alvaro Chrispino, Gustavo Guedes and Eduardo Ogasawara
    Citation: BMC Research Notes 2020 13:274
    Content type: Data note Published on:

  12. The present database contains information on sociodemographic and clinical data as well as data from the Care Transition Measure (CTM 15-Brazil) of cancer patients undergoing clinical or surgical treatment. Da...

    Authors: Elisiane Lorenzini, Julia Estela Willrich Boell, Nelly D. Oelke, Caroline Donini Rodrigues, Letícia Flores Trindade, Vanessa Dalsasso Batista Winter, Michelle Mariah Malkiewiez, Gabriela Ceretta Flôres, Pâmella Pluta and Adriane Cristina Bernat Kolankiewicz
    Citation: BMC Research Notes 2020 13:267
    Content type: Data note Published on:

  13. In order to characterize a river-associated, enriched microbiome capable of degrading an anthraquinone dye from the oil blue family, as well as assessing its functional potential, we performed a taxa-specific ...

    Authors: Ayixon Sánchez-Reyes, Luz Bretón-Deval, Hayley Mangelson and Alejandro Sanchez-Flores
    Citation: BMC Research Notes 2020 13:265
    Content type: Data note Published on:

  14. UHRF1 is a multi-domain protein that recognizes both histone and DNA modification marks on chromatin. UHRF1 is involved in various cellular processes that lead to tumorigenesis and thus attracted considerable ...

    Authors: Debasis Patnaik
    Citation: BMC Research Notes 2020 13:254
    Content type: Data note Published on:

  15. Although follicular thyroid carcinoma (FTC) generally has a good prognosis, it occasionally metastasises, leading to poor prognosis. Unfortunately, minimally invasive FTC (mi-FTC) and encapsulated angioinvasiv...

    Authors: Tomoo Jikuzono, Tomoko Ishikawa, Mitsuyoshi Hirokawa, Iwao Sugitani and Osamu Ishibashi
    Citation: BMC Research Notes 2020 13:241
    Content type: Data note Published on:

  16. File fragment classification of video file formats is a topic of interest in network forensics. There are some publicly available datasets for file fragments of various file types such as textual, audio, and i...

    Authors: Narges Sadeghi, Mohadeseh Fahiminia and Mehdi Teimouri
    Citation: BMC Research Notes 2020 13:213
    Content type: Data note Published on:

  18. The genus Bacillus comprises spore-forming rod-shaped Gram-positive bacteria, which usually grow aerobically or anaerobically. Members of this genus are common environmental microorganisms. Also, they can be moni...

    Authors: Waleed S. Mohammed, Elvira E. Ziganshina, Ramilya F. Akhmetova and Ayrat M. Ziganshin
    Citation: BMC Research Notes 2020 13:152
    Content type: Data note Published on:

  19. In the bovine placenta, intimate fetomaternal contact is restricted to placentomes. Within the placentomes fetal chorionic villi interdigitate with corresponding maternal caruncular crypts. The trophoblast epi...

    Authors: Marina Polei, Juliane Günther, Dirk Koczan and Rainer Fürbass
    Citation: BMC Research Notes 2020 13:115
    Content type: Data note Published on:

  20. Advanced tools and resources are needed to efficiently and sustainably produce food for an increasing world population in the context of variable environmental conditions. The maize genomes to fields (G2F) ini...

    Authors: Bridget A. McFarland, Naser AlKhalifah, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, Jode Edwards, David Ertl, Joseph L. Gage, Celeste M. Falcon, Sherry Flint-Garcia, Michael A. Gore, Christopher Graham, Candice N. Hirsch, James B. Holland, Elizabeth Hood…
    Citation: BMC Research Notes 2020 13:71
    Content type: Data note Published on:

  21. To show the body image of people over 50 in Spain using the Body Shape Questionnaire test (BSQ), taking into account attribute variables of great interest such as age, gender, sentimental status, habitat (rural o...

    Authors: Roberto Sánchez-Cabrero, Fernando Martínez-López and Reyna Guadalupe Euán-Ramírez
    Citation: BMC Research Notes 2020 13:50
    Content type: Data note Published on:

  23. Pabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional...

    Authors: Ruby Dhar, Karthikeyan Pethusamy, Sunil Singh, Indrani Mukherjee, Ashikh Seethy, Bharoti Sengupta, Tryambak Srivastava, Sajib Sarkar, Vikramjit Mandal, Madhumita Karmakar, Sandipan Gupta, Arpita Ghosh and Subhradip Karmakar
    Citation: BMC Research Notes 2019 12:825
    Content type: Data note Published on:

  24. Early-onset severe preeclampsia is associated with significant maternal and perinatal morbidity and mortality especially in low-resource settings, where women have limited access to antenatal care. This datase...

    Authors: Solwayo Ngwenya, Brian Jones, Desmond Mwembe, Cladnos Mapfumo, Akinbowale Familusi, Hausitoe Nare and Alexander Edward Patrick Heazell
    Citation: BMC Research Notes 2019 12:822
    Content type: Data note Published on:

  25. Text classification is a recurrent goal in machine learning projects and a typical task in crowdsourcing platforms. Hybrid approaches, leveraging crowdsourcing and machine learning, work better than either in ...

    Authors: Jorge Ramírez, Marcos Baez, Fabio Casati and Boualem Benatallah
    Citation: BMC Research Notes 2019 12:820
    Content type: Data note Published on:

  26. File fragment classification of audio file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with audio formats. Therewith, there is no public dataset fo...

    Authors: Atieh Khodadadi and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:819
    Content type: Data note Published on:

  27. We report a transcriptome acquisition for the bath sponge Spongia officinalis, a non-model marine organism that hosts rich symbiotic microbial communities. To this end, a pipeline was developed to efficiently sep...

    Authors: Tereza Manousaki, Vasiliki Koutsouveli, Jacques Lagnel, Spyridon Kollias, Costas S. Tsigenopoulos, Christos Arvanitidis, Antonios Magoulas, Costas Dounas and Thanos Dailianis
    Citation: BMC Research Notes 2019 12:813
    Content type: Data note Published on:

  28. Salmonella bacteria can induce the unfolded protein response, a cellular stress response to misfolding proteins within the endoplasmic reticulum. Salmonella can exploit the host unfolded protein response leading ...

    Authors: Antony N. Antoniou, Simon J. Powis and Janos Kriston-Vizi
    Citation: BMC Research Notes 2019 12:808
    Content type: Data note Published on:

  29. Classification of textual file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with textual formats. Therewith, there is no public dataset for file fra...

    Authors: Fatemeh Mansouri Hanis and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:801
    Content type: Data note Published on:

  31. File fragment classification of image file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with image formats. Therewith, there is no public dataset fo...

    Authors: Reyhane Fakouri and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:774
    Content type: Data note Published on:

  32. The data presented here is part of a study that was aimed at characterizing the molecular mechanisms of polyunsaturated fatty acid metabolism by CYP2J2, the main cytochrome P450 enzyme active in the human card...

    Authors: K. K. Abelak, D. Bishop-Bailey and I. Nobeli
    Citation: BMC Research Notes 2019 12:760
    Content type: Data note Published on:

  33. In frame of a study to characterize the interaction of human macrophage-like cells with pathogenic corynebacteria, Corynebacterium diphtheriae and Corynebacterium ulcerans, live cell imaging experiments were carr...

    Authors: Dulanthi Weerasekera, Jonas Hahn, Martin Herrmann and Andreas Burkovski
    Citation: BMC Research Notes 2019 12:695
    Content type: Data note Published on:

  34. Corynebacterium ulcerans can colonize a wide variety of animals and also humans are infected, typically by zoonotic transmission. Symptoms range from skin ulcers or systemic infections to diphtheria-like illness....

    Authors: Anne Busch, Jens Möller, Andreas Burkovski and Helmut Hotzel
    Citation: BMC Research Notes 2019 12:692
    Content type: Data note Published on:

  35. Like many other proteins, those belonging to the signal transduction cascade initiating sporulation (Spo0 pathway) have conserved protein domains (Capra and Laub in Annu Rev Microbiol 66:325–47, 2012). Improvemen...

    Authors: Paola Martinez-Amador, Nori Castañeda, Antonio Loza, Lizeth Soto, Enrique Merino and Rosa Maria Gutierrez-Rios
    Citation: BMC Research Notes 2019 12:686
    Content type: Data note Published on:

  36. The purpose of this experiment is to analyze the changes of transcriptome in Pseudomonas aeruginosa under the action of sodium houttuyfonate (SH) to reveal the possible mechanism of SH inhibiting P. aeruginosa. W...

    Authors: Yeye Zhao, Yuanqing Si, Longfei Mei, Jiadi Wu, Jing Shao, Changzhong Wang and Daqiang Wu
    Citation: BMC Research Notes 2019 12:685
    Content type: Data note Published on:

  37. Persian walnut (Juglans regia L.), the walnut species cultivated for nut production, is grown worldwide in temperate areas. In this work, chronological phenotypic data have been collected regarding a part of the ...

    Authors: Anthony Bernard, Teresa Barreneche, Marine Delmas, Sophie Durand, Cyril Pommier, Fabrice Lheureux, Eloïse Tranchand, Marianne Naudin and Elisabeth Dirlewanger
    Citation: BMC Research Notes 2019 12:662
    Content type: Data note Published on:

  39. Basal stem rot disease causes severe economic losses to oil palm production in South-east Asia and little is known on the pathogenicity of the pathogen, the basidiomyceteous Ganoderma boninense. Our data presente...

    Authors: Mui Yun Wong, Nisha T. Govender and Chia Sui Ong
    Citation: BMC Research Notes 2019 12:631
    Content type: Data note Published on:

  40. Transcription of eukaryotic protein-coding genes by RNA polymerase II (pol II) is highly regulated at initiation, elongation and termination. Transcription is also coordinated with co-transcriptional processin...

    Authors: Michael Tellier, Jessica G. Hardy, Chris J. Norbury and Shona Murphy
    Citation: BMC Research Notes 2019 12:554
    Content type: Data note Published on:

    The Data note to this article has been published in BMC Research Notes 2018 11:894

  41. Crop production is an important variable in social, economic and environmental analyses. There is an abundance of crop data available for the United States, but we lack a typology of county-level crop producti...

    Authors: Courtney R. Hammond Wagner, Meredith T. Niles and Eric D. Roy
    Citation: BMC Research Notes 2019 12:552
    Content type: Data note Published on:

  43. Label-free quantitative proteomics has emerged as a powerful strategy to obtain high quality quantitative measures of the proteome with only a very small quantity of total protein extract. Because our research...

    Authors: Gaëlle Lelandais, Thomas Denecker, Camille Garcia, Nicolas Danila, Thibaut Léger and Jean-Michel Camadro
    Citation: BMC Research Notes 2019 12:470
    Content type: Data note Published on:

  44. Aspergillus flavus isolate TERIBR1 was isolated from tannery sludge highly contaminated with chromium. During characterization process, it exhibited capability to adapt and grow in fungal growth media amended wit...

    Authors: Pushplata Prasad Singh, Akanksha Jaiswar, Divya Srivastava and Alok Adholeya
    Citation: BMC Research Notes 2019 12:443
    Content type: Data note Published on:

  45. The data presented herein represents the raw genotype data of a recently conducted larger study which investigated the association of single nucleotide polymorphisms (SNPs) in breast cancer related genes with ...

    Authors: Nirmala Dushyanthi Sirisena, Nilakshi Samaranayake and Vajira H. W. Dissanayake
    Citation: BMC Research Notes 2019 12:435
    Content type: Data note Published on:

    The Data note to this article has been published in BMC Research Notes 2018 11:643

    The Research article to this article has been published in BMC Cancer 2018 18:180

  46. In humanitarian settings, children of pastoralists usually are the increased risk of malnutrition and its related complications. Consequently, as part of the program’s targeted response to the burgeoning malnu...

    Authors: Emmanuel Nene Odjidja and Sonia Hakizimana
    Citation: BMC Research Notes 2019 12:434
    Content type: Data note Published on:

  47. Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh...

    Authors: Amam Zonaed Siddiki, Abdul Baten, Masum Billah, Mohammad Atique Ul Alam, Kazi Shefaul Mulk Shawrob, Sourav Saha, Muntaha Chowdhury, Atif Hasan Rahman, Michael Stear, Gous Miah, Mahadia Kumkum, Mohammad Sirazul Islam, Mohammad Alamgir Hossain, A. K. M. Moniruzzaman Mollah and Md. Kabirul Islam Khan
    Citation: BMC Research Notes 2019 12:362
    Content type: Data note Published on:

  48. Mycolicibacterium peregrinum, a rapidly growing mycobacterial species, can opportunistically infect humans and other animals. Although M. peregrinum infections in animals have been reported, the infection sources...

    Authors: Tetsuya Komatsu, Kenji Ohya, Kotaro Sawai, Justice Opare Odoi, Keiko Otsu, Atsushi Ota, Toshihiro Ito, Mikihiko Kawai and Fumito Maruyama
    Citation: BMC Research Notes 2019 12:341
    Content type: Data note Published on:

  50. Soybean aphid (Aphis glycines Matsumura; SBA) is the most economically damaging insect of soybean (Glycine max) in the United States. One previous study demonstrated that avirulent (biotype 1) and virulent (bioty...

    Authors: Surendra Neupane, Adam J. Varenhorst and Madhav P. Nepal
    Citation: BMC Research Notes 2019 12:325
    Content type: Data note Published on: