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Data Notes

At BMC Research Notes, we recognise that valuable data often go unpublished when instead they could be helping to progress science. This is why we launched Data notes: a short article type allowing researchers to describe their data, sharing them with the research community and receiving credit for all their work - not just a finished article.

We present here all the Data notes published in the journal, a free and open resource for the scientific community. Why not join them and free your data too?

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  1. Altitude integrates changes in environmental conditions that determine shifts in vegetation, including temperature, precipitation, solar radiation and edaphogenetic processes. In turn, vegetation alters soil b...

    Authors: Alexia Stokes, Guillermo Angeles, Fabien Anthelme, Eduardo Aranda-Delgado, Isabelle Barois, Manon Bounous, Nereyda Cruz-Maldonado, Thibaud Decaëns, Stéphane Fourtier, Grégoire T. Freschet, Quentin Gabriac, Daniel Hernández-Cáceres, Leonor Jiménez, Jing Ma, Zhun Mao, Beatriz Eugenia Marín-Castro…
    Citation: BMC Research Notes 2021 14:54
    Content type: Data note Published on:

  2. Kazakhstan is a Central Asian crossroad of European and Asian populations situated along the way of the Great Silk Way. The territory of Kazakhstan has historically been inhabited by nomadic tribes and today i...

    Authors: Ulykbek Kairov, Askhat Molkenov, Saule Rakhimova, Ulan Kozhamkulov, Aigul Sharip, Daniyar Karabayev, Asset Daniyarov, Joseph H.Lee, Joseph D.Terwilliger, Ainur Akilzhanova and Zhaxybay Zhumadilov
    Citation: BMC Research Notes 2021 14:45
    Content type: Data note Published on:

  3. The purpose of this data set is to capture the complete diurnal (i.e., daily) transcriptome of fully expanded third leaves from the C4 panacoid grasses sorghum (Sorghum bicolor), maize (Zea mays), and foxtail mil...

    Authors: Xianjun Lai, Claire Bendix, Yang Zhang, James C. Schnable and Frank G. Harmon
    Citation: BMC Research Notes 2021 14:24
    Content type: Data note Published on:

  4. The urgent need for novel antibiotics cannot be overemphasized. Hafnia alvei A23BA was isolated from plant rhizosphere as part of an effort to recover novel antibiotic-producing bacterial strains from soil sample...

    Authors: Opeyemi K. Awolope, Noelle H. O’Driscoll, Alberto Di Salvo and Andrew J. Lamb
    Citation: BMC Research Notes 2021 14:8
    Content type: Data note Published on:

  5. This data paper aims to provide the data set of a practical method to health, safety, and environmental risk assessment to assess and rank potential threats/hazards and to prevent and decrease the accidents an...

    Authors: Alireza Dehdashti, Farin Fatemi, Muhammadreza Janati, Fatemeh Asadi and Marzieh Belji Kangarloo
    Citation: BMC Research Notes 2020 13:554
    Content type: Data note Published on:

  8. Passalora sequoiae (family Mycosphaerellaceae) causes a twig blight on Leyland cypress that requires numerous fungicide applications annually to minimize economic losses for ornamental plant nursery and Christmas...

    Authors: Warren E. Copes, Jorge Ibarra Caballero, Ebrahiem Babiker, Jane E. Stewart, Valerie A. Orner, Alan S. Windham and Renee S. Arias
    Citation: BMC Research Notes 2020 13:505
    Content type: Data note Published on:

  9. The Brown trout is a salmonid species with a high commercial value in Europe. Life history and spawning behaviour include resident (Salmo trutta m. fario) and migratory (Salmo trutta m. trutta) ecotypes. The main...

    Authors: J. Fibla, N. Oromi, M. Pascual-Pons, J. L. Royo, A. Palau and M. Fibla
    Citation: BMC Research Notes 2020 13:503
    Content type: Data note Published on:

  10. The availability of matched sequencing data for the same sample across different sequencing platforms is a necessity for validation and effective comparison of sequencing platforms. A commonly sequenced sample...

    Authors: Shannon N. Fenlon, Yuemin Celina Chee, Jacqueline Lai Yuen Chee, Yeen Hui Choy, Alexis Jiaying Khng, Lu Ting Liow, Kurosh S. Mehershahi, Xiaoan Ruan, Stephen W. Turner, Fei Yao and Swaine L. Chen
    Citation: BMC Research Notes 2020 13:487
    Content type: Data note Published on:

  11. The data herein represents multiple gauge sets and multiple radar sites of like-type Doppler data sets combined to produce populations of ordered pairs. Publications spanning decades yet specific to Doppler ra...

    Authors: Jesse W. Lansford, Tyson H. Walsh, T. V. Hromadka II and P. Rao
    Citation: BMC Research Notes 2020 13:482
    Content type: Data note Published on:

  12. Respiratory tract diseases (RTDs) are among the top five leading causes of death worldwide. Mortality rates due to respiratory tract diseases (MRRTDs) follow a spatial pattern and this may suggest a potential ...

    Authors: Elahe Pishgar, Alireza Mohammadi, Nasser Bagheri and Behzad Kiani
    Citation: BMC Research Notes 2020 13:469
    Content type: Data note Published on:

  13. Colorectal cancer (CRC) is the third most common cancer across the world that multiple risk factors together contribute to CRC development. There is a limited research report on impact of nutritional risk fact...

    Authors: Neda Firouraghi, Nasser Bagheri, Fatemeh Kiani, Ladan Goshayeshi, Majid Ghayour-Mobarhan, Khalil Kimiafar, Saeid Eslami and Behzad Kiani
    Citation: BMC Research Notes 2020 13:466
    Content type: Data note Published on:

  14. The data presented herein represents the simulated datasets of a recently conducted larger study which investigated the behaviour of Bayesian indices of significance and effect size as alternatives to traditio...

    Authors: Riko Kelter
    Citation: BMC Research Notes 2020 13:452
    Content type: Data note Published on:

  15. Maranhão State—Northeast Brazil–has the world’s highest incidence of penile cancer. This study describes the epidemiological, histopathological and clinical profile of patients stricken across that Brazilian s...

    Authors: Ciro Bezerra Vieira, Antonio Teixeira-Júnior, Laisson Feitoza, Jaqueline Pinho, José Calixto, Francisco Sérgio Moura Silva do Nascimento, Marcos Adriano Garcia Campos, Joyce Lages, Antonio Machado Alencar Junior, Fernando Soares, Isabela Cunha and Gyl Eanes Barros Silva
    Citation: BMC Research Notes 2020 13:442
    Content type: Data note Published on:

  16. Phytohormones are small signaling molecules with crucial roles in plant growth, development, and environmental adaptation to biotic and abiotic stress responses. Despite several previously published molecular ...

    Authors: Junesung Lee, Jae-Young Nam, Hakgi Jang, Nayoung Kim, Yong-Min Kim, Won-Hee Kang and Seon-In Yeom
    Citation: BMC Research Notes 2020 13:440
    Content type: Data note Published on:

  17. Patients with end-stage heart failure (ESHF) treated with ventricular assist devices (VADs) tend to gain weight after implantation, which is associated with higher complication rates and is a contraindication ...

    Authors: Adrian daSilva-deAbreu, Kiran Garikapati, Bader Aldeen Alhafez, Sapna Desai, Clement Eiswirth, Selim Krim, Hamang Patel, Carl J. Lavie, Hector O. Ventura, Juan Francisco Loro-Ferrer and Stacy A. Mandras
    Citation: BMC Research Notes 2020 13:439
    Content type: Data note Published on:

  18. Nuclear Factor One X (NFIX) is a transcription factor expressed by neural stem cells within the developing mouse brain and spinal cord. In order to characterise the pathways by which NFIX may regulate neural s...

    Authors: Elise Matuzelski, Alexandra Essebier, Lachlan Harris, Richard M. Gronostajski, Tracey J. Harvey and Michael Piper
    Citation: BMC Research Notes 2020 13:437
    Content type: Data note Published on:

  19. The data provided herein represent the whole-genome resequencing data related to three wolves and three Iranian local dogs. The understanding of genome evolution during animal domestication is an interesting s...

    Authors: Zeinab Amiri Ghanatsaman, Guo-Dong Wang, Masood Asadi Fozi, Ya-Ping Zhang and Ali Esmailizadeh
    Citation: BMC Research Notes 2020 13:436
    Content type: Data note Published on:

  20. Clostridium species of the order Clostridiales are mostly strictly anaerobic rod-shaped bacteria. They can be detected in a variety of environments, including the intestines of humans and animals, soil, water, an...

    Authors: Elvira E. Ziganshina, Waleed S. Mohammed and Ayrat M. Ziganshin
    Citation: BMC Research Notes 2020 13:413
    Content type: Data note Published on:

  21. Labeo catla (catla), one of the three Indian major carps, is native to the Indo-Gangetic riverine system of India as well as the rivers of Pakistan, Bangladesh, Nepal and Myanmar. Its higher growth rate and compa...

    Authors: Lakshman Sahoo, Paramananda Das, Bismay Sahoo, Gargee Das, Prem Kumar Meher, Uday Kumar Udit, Kanta Das Mahapatra and Jitendra Kumar Sundaray
    Citation: BMC Research Notes 2020 13:411
    Content type: Data note Published on:

  22. Efforts to restore tropical peat swamp forests in Indonesia face huge challenges of potential failures due to socio-economic factors and ecological dynamics attributed to lack of knowledge on the adaptive mech...

    Authors: Iskandar Zulkarnaen Siregar, Fifi Gus Dwiyanti, Ulfah Juniarti Siregar and Deden Derajat Matra
    Citation: BMC Research Notes 2020 13:405
    Content type: Data note Published on:

  23. Data was collected to evaluate the survival rates of head and neck (conjunctiva, oropharyngeal and non-oropharyngeal) squamous cell carcinomas in Ghana.

    Authors: Osei Owusu-Afriyie, W. K. B. A. Owiredu, Alexander Acheampong Oti, Emmanuel Acheampong, Kwabena Owusu-Danquah, Rita Larsen-Reindorf, Linda Ahenkorah Fondjo, Evans Asamoah Adu, Sampson Donkor and Peter Donkor
    Citation: BMC Research Notes 2020 13:392
    Content type: Data note Published on:

  24. Patients with end-stage heart failure (ESHF) treated with ventricular assist devices (VADs) tend to gain weight, which may prevent them from receiving heart transplantation (HT) if their body mass index (BMI) ...

    Authors: Adrian daSilva-deAbreu, Bader Aldeen Alhafez, Yuhamy Curbelo-Pena, Carl J. Lavie, Hector O. Ventura, Juan Francisco Loro-Ferrer and Stacy A. Mandras
    Citation: BMC Research Notes 2020 13:382
    Content type: Data note Published on:

  25. Pig pluripotent stem cells have tremendous potential because the pig is a valuable animal as both an agricultural resource and as a preclinical model of human therapy. To date, a lack of understanding of pig p...

    Authors: Kwang-Hwan Choi, Dong-Kyung Lee, Jong-Nam Oh, Seung-Hun Kim, Mingyun Lee, Sung Woo Kim and Chang-Kyu Lee
    Citation: BMC Research Notes 2020 13:144
    Content type: Data note Published on:

  26. The leading factors of paediatric, pedestrian road traffic injuries (PPRTIs) are associated with the characteristics of immediate environment. Spatial analysis of data related to PPRTIs could provide useful kn...

    Authors: Parinaz Tabari, Hamidreza Shabanikiya, Nasser Bagheri, Robert Bergquist, Soheil Hashtarkhani, Fatemeh Kiani, Alireza Mohammadi and Behzad Kiani
    Citation: BMC Research Notes 2020 13:363
    Content type: Data note Published on:

  28. Genome sequences are a vital resource for accelerating the biological exploration of an organism of interest. Pythium destruens (a synonym of Pythium insidiosum) causes a difficult-to-treat infectious disease cal...

    Authors: Theerapong Krajaejun, Weerayuth Kittichotirat, Preecha Patumcharoenpol, Thidarat Rujirawat, Tassanee Lohnoo and Wanta Yingyong
    Citation: BMC Research Notes 2020 13:329
    Content type: Data note Published on:

  29. Spiroplasma citri is a bacterium with a wide host range and is the causal agent of citrus stubborn and brittle root diseases of citrus and horseradish, respectively. S. citri is transmitted in a circulative, pers...

    Authors: Raymond Yokomi, Rachel Rattner, Fatima Osman, Yogita Maheshwari, Vijayanandraj Selvaraj, Deborah Pagliaccia, Jianchi Chen and Georgios Vidalakis
    Citation: BMC Research Notes 2020 13:320
    Content type: Data note Published on:

  30. Mouse models have delivered variable recapitulation of Kyasanur Forest disease (KFD) pathology and consistently demonstrated neurological involvement which may be a limited feature of human disease. With the p...

    Authors: A. M. Nikiforuk, K. Tierny, T. A. Cutts, D. K. Kobasa, S. S. Theriault and B. W. M. Cook
    Citation: BMC Research Notes 2020 13:291
    Content type: Data note Published on:

  31. Malaria is an infectious disease that annually presents around 200,000 cases in Brazil. The availability of data on malaria is crucial for enabling and supporting studies that can promote actions to prevent it...

    Authors: Lais Baroni, Marcel Pedroso, Christovam Barcellos, Rebecca Salles, Samella Salles, Balthazar Paixão, Alvaro Chrispino, Gustavo Guedes and Eduardo Ogasawara
    Citation: BMC Research Notes 2020 13:274
    Content type: Data note Published on:

  32. The present database contains information on sociodemographic and clinical data as well as data from the Care Transition Measure (CTM 15-Brazil) of cancer patients undergoing clinical or surgical treatment. Da...

    Authors: Elisiane Lorenzini, Julia Estela Willrich Boell, Nelly D. Oelke, Caroline Donini Rodrigues, Letícia Flores Trindade, Vanessa Dalsasso Batista Winter, Michelle Mariah Malkiewiez, Gabriela Ceretta Flôres, Pâmella Pluta and Adriane Cristina Bernat Kolankiewicz
    Citation: BMC Research Notes 2020 13:267
    Content type: Data note Published on:

  33. In order to characterize a river-associated, enriched microbiome capable of degrading an anthraquinone dye from the oil blue family, as well as assessing its functional potential, we performed a taxa-specific ...

    Authors: Ayixon Sánchez-Reyes, Luz Bretón-Deval, Hayley Mangelson and Alejandro Sanchez-Flores
    Citation: BMC Research Notes 2020 13:265
    Content type: Data note Published on:

  34. UHRF1 is a multi-domain protein that recognizes both histone and DNA modification marks on chromatin. UHRF1 is involved in various cellular processes that lead to tumorigenesis and thus attracted considerable ...

    Authors: Debasis Patnaik
    Citation: BMC Research Notes 2020 13:254
    Content type: Data note Published on:

  35. Although follicular thyroid carcinoma (FTC) generally has a good prognosis, it occasionally metastasises, leading to poor prognosis. Unfortunately, minimally invasive FTC (mi-FTC) and encapsulated angioinvasiv...

    Authors: Tomoo Jikuzono, Tomoko Ishikawa, Mitsuyoshi Hirokawa, Iwao Sugitani and Osamu Ishibashi
    Citation: BMC Research Notes 2020 13:241
    Content type: Data note Published on:

  36. File fragment classification of video file formats is a topic of interest in network forensics. There are some publicly available datasets for file fragments of various file types such as textual, audio, and i...

    Authors: Narges Sadeghi, Mohadeseh Fahiminia and Mehdi Teimouri
    Citation: BMC Research Notes 2020 13:213
    Content type: Data note Published on:

  38. The genus Bacillus comprises spore-forming rod-shaped Gram-positive bacteria, which usually grow aerobically or anaerobically. Members of this genus are common environmental microorganisms. Also, they can be moni...

    Authors: Waleed S. Mohammed, Elvira E. Ziganshina, Ramilya F. Akhmetova and Ayrat M. Ziganshin
    Citation: BMC Research Notes 2020 13:152
    Content type: Data note Published on:

  39. In the bovine placenta, intimate fetomaternal contact is restricted to placentomes. Within the placentomes fetal chorionic villi interdigitate with corresponding maternal caruncular crypts. The trophoblast epi...

    Authors: Marina Polei, Juliane Günther, Dirk Koczan and Rainer Fürbass
    Citation: BMC Research Notes 2020 13:115
    Content type: Data note Published on:

  40. Advanced tools and resources are needed to efficiently and sustainably produce food for an increasing world population in the context of variable environmental conditions. The maize genomes to fields (G2F) ini...

    Authors: Bridget A. McFarland, Naser AlKhalifah, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, Jode Edwards, David Ertl, Joseph L. Gage, Celeste M. Falcon, Sherry Flint-Garcia, Michael A. Gore, Christopher Graham, Candice N. Hirsch, James B. Holland, Elizabeth Hood…
    Citation: BMC Research Notes 2020 13:71
    Content type: Data note Published on:

  41. To show the body image of people over 50 in Spain using the Body Shape Questionnaire test (BSQ), taking into account attribute variables of great interest such as age, gender, sentimental status, habitat (rural o...

    Authors: Roberto Sánchez-Cabrero, Fernando Martínez-López and Reyna Guadalupe Euán-Ramírez
    Citation: BMC Research Notes 2020 13:50
    Content type: Data note Published on:

  43. Pabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional...

    Authors: Ruby Dhar, Karthikeyan Pethusamy, Sunil Singh, Indrani Mukherjee, Ashikh Seethy, Bharoti Sengupta, Tryambak Srivastava, Sajib Sarkar, Vikramjit Mandal, Madhumita Karmakar, Sandipan Gupta, Arpita Ghosh and Subhradip Karmakar
    Citation: BMC Research Notes 2019 12:825
    Content type: Data note Published on:

  44. Early-onset severe preeclampsia is associated with significant maternal and perinatal morbidity and mortality especially in low-resource settings, where women have limited access to antenatal care. This datase...

    Authors: Solwayo Ngwenya, Brian Jones, Desmond Mwembe, Cladnos Mapfumo, Akinbowale Familusi, Hausitoe Nare and Alexander Edward Patrick Heazell
    Citation: BMC Research Notes 2019 12:822
    Content type: Data note Published on:

  45. Text classification is a recurrent goal in machine learning projects and a typical task in crowdsourcing platforms. Hybrid approaches, leveraging crowdsourcing and machine learning, work better than either in ...

    Authors: Jorge Ramírez, Marcos Baez, Fabio Casati and Boualem Benatallah
    Citation: BMC Research Notes 2019 12:820
    Content type: Data note Published on:

  46. File fragment classification of audio file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with audio formats. Therewith, there is no public dataset fo...

    Authors: Atieh Khodadadi and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:819
    Content type: Data note Published on:

  47. We report a transcriptome acquisition for the bath sponge Spongia officinalis, a non-model marine organism that hosts rich symbiotic microbial communities. To this end, a pipeline was developed to efficiently sep...

    Authors: Tereza Manousaki, Vasiliki Koutsouveli, Jacques Lagnel, Spyridon Kollias, Costas S. Tsigenopoulos, Christos Arvanitidis, Antonios Magoulas, Costas Dounas and Thanos Dailianis
    Citation: BMC Research Notes 2019 12:813
    Content type: Data note Published on:

  48. Salmonella bacteria can induce the unfolded protein response, a cellular stress response to misfolding proteins within the endoplasmic reticulum. Salmonella can exploit the host unfolded protein response leading ...

    Authors: Antony N. Antoniou, Simon J. Powis and Janos Kriston-Vizi
    Citation: BMC Research Notes 2019 12:808
    Content type: Data note Published on:

  49. Classification of textual file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with textual formats. Therewith, there is no public dataset for file fra...

    Authors: Fatemeh Mansouri Hanis and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:801
    Content type: Data note Published on: