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Data Notes

At BMC Research Notes, we recognise that valuable data often go unpublished when instead they could be helping to progress science. This is why we launched Data notes: a short article type allowing researchers to describe their data, sharing them with the research community and receiving credit for all their work - not just a finished article.

We present here all the Data notes published in the journal, a free and open resource for the scientific community. Why not join them and free your data too?

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  1. The collection of genotype data was conducted as an essential part of a pivotal research project with the goal of examining the genetic variability of skin, hair, and iris color among the Kazakh population. Th...

    Authors: Alizhan Bukayev, Baglan Aidarov, Denis Fesenko, Viktoriya Saidamarova, Ivan Ivanovsky, Elina Maltseva, Dinara Naizabayeva, Ayagoz Bukayeva, Bekzhan Faizov, Vladimir Pylev, Akynkali Darmenov, Yuriy Skiba, Elena Balanovska and Maxat Zhabagin
    Citation: BMC Research Notes 2024 17:51
  2. Computed tomography (CT) was a widely used diagnostic technique for COVID-19 during the pandemic. High-Resolution Computed Tomography (HRCT), is a type of computed tomography that enhances image resolution thr...

    Authors: Iraj Abedi, Mahsa Vali, Bentolhoda Otroshi, Maryam Zamanian and Hamidreza Bolhasani
    Citation: BMC Research Notes 2024 17:32
  3. The data was collected for a cohort study to assess the capability of thermal videos in the detection of SARS-CoV-2. Using this data, a published study applied machine learning to analyze thermal image feature...

    Authors: Sofia Rojas-Zumbado, Jose-Gerardo Tamez-Peña, Andrea-Alejandra Trevino-Ferrer, Carlos-Andres Diaz-Garza, Meritxell Ledesma-Hernández, Alejandra-Celina Esparza-Sandoval, Rocio Ortiz-Lopez, Guillermo Torre-Amione, Servando Cardona-Huerta and Victor Trevino
    Citation: BMC Research Notes 2024 17:30
  4. This article presents the process of extraction and treatment of two datasets from the General Ombudsman of the Brazilian Unified Health System (OUVSUS). The resulting datasets allow the analysis of manifestat...

    Authors: Raphael de Freitas Saldanha, Vinicius Kreischer, Raquel Gritz, Matheus Miloski, Carmen Lúcia Corrêa Bonifácio, Carlos Leonardo Souza Cardoso, Ariane Camilo Pinheiro Alves, Domício Aurélio de Sá, Garibaldi Dantas Gurgel Junior, Rafael da Silveira Moreira, Michelle Vieira Fernandez, Jefferson da Costa Lima and Marcel Pedroso
    Citation: BMC Research Notes 2024 17:18
  5. Candida albicans, a polymorphic yeast, is one of the most common, opportunistic fungal pathogens of humans. Among the different morphological forms, opaque form is one of the least-studied ones. This opaque pheno...

    Authors: Gajanan Zore, Mazen Abdulghani, Santosh Kodgire, Rubina Kazi, Amruta Shelar and Rajendra Patil
    Citation: BMC Research Notes 2024 17:2
  6. The data provided herein represent the whole-genome sequencing data associated with three sheep breeds of Iranian native breeds. Sheep are the first domesticated animals that, during the long path of the evolu...

    Authors: Leila Mohammadipour Saadatabadi, Mohammadreza Mohammadabadi, Zeinab Amiri Ghanatsaman, Olena Babenko, Ruslana Volodymyrivna Stavetska, Oleksandr Mikolayovich Kalashnik, Volodymyr Afanasenko, Oleksandr Anatoliiovych Kochuk-Yashchenko, Dmytro Mykolaiovych Kucher and Hojjat Asadollahpour Nanaei
    Citation: BMC Research Notes 2023 16:353
  7. Soil fauna plays a crucial role in contributing to litter breakdown, accelerating the decomposition rate and enhancing the biogeochemical cycle in terrestrial ecosystems. Comprehending the specific fauna role ...

    Authors: Dangjun Wang, Wuyang Xie, Fang Yuan, Chaochao Deng, Ruimin Qin and Huakun Zhou
    Citation: BMC Research Notes 2023 16:321
  8. Pythium insidiosum causes a difficult-to-treat infectious condition called pythiosis, with high morbidity and mortality. So far, genome data of at least 10 strains of P. insidiosum, primarily classified in the ph...

    Authors: Theerapong Krajaejun, Preecha Patumcharoenpol, Thidarat Rujirawat, Weerayuth Kittichotirat and Sithichoke Tangphatsornruang
    Citation: BMC Research Notes 2023 16:316
  9. The interferon-triggered innate immune response has been observed to be under strong diversifying selection to counteract the many pathogens hosts have to defend against. In particular, rewiring of gene transc...

    Authors: Daniel Ramirez, Edward B. Chuong and Robin D. Dowell
    Citation: BMC Research Notes 2023 16:292
  10. To investigate first, the level, distribution, patterns and prevalence of seven-day, objectively-measured physical activity (ambulation) in a rural health and demographic surveillance system (HDSS) site in Sou...

    Authors: Ian Cook
    Citation: BMC Research Notes 2023 16:284
  11. To assess risk factors for HPV infection, determine knowledge about HPV vaccines, assess willingness to receive the HPV vaccine among adolescent and early adult girls in Nigeria, we administered a structured q...

    Authors: Nanma T. Cosmas, Lohya Nimzing, Daniel Z. Egah, Oluranti A. Famooto, Sally N. Adebamowo and Clement A. Adebamowo
    Citation: BMC Research Notes 2023 16:272
  12. Pythium insidiosum is the causative agent of pythiosis, a difficult-to-treat condition, in humans and animals worldwide. Biological information about this filamentous microorganism is sparse. Genomes of several P...

    Authors: Theerapong Krajaejun, Preecha Patumcharoenpol, Thidarat Rujirawat, Weerayuth Kittichotirat, Sithichoke Tangphatsornruang, Tassanee Lohnoo and Wanta Yingyong
    Citation: BMC Research Notes 2023 16:271
  13. The aim of this data paper is to describe a collection of 33 genomic, transcriptomic and epigenomic sequencing datasets of the B-cell acute lymphoblastic leukemia (ALL) cell line REH. REH is one of the most fr...

    Authors: Mariya Lysenkova Wiklander, Elin Övernäs, Johanna Lagensjö, Amanda Raine, Anna Petri, Ann-Christin Wiman, Jon Ramsell, Yanara Marincevic-Zuniga, Henrik Gezelius, Tom Martin, Ignas Bunikis, Sara Ekberg, Rikard Erlandsson, Pontus Larsson, Mai-Britt Mosbech, Susana Häggqvist…
    Citation: BMC Research Notes 2023 16:265
  14. Black poplar (Populus nigra L.) is a species native to Eurasia with a wide distribution area. It is an ecologically important species from riparian ecosystems, that is used as a parent of interspecific (P. deltoi...

    Authors: Odile Rogier, Aurélien Chateigner, Marie-Claude Lesage-Descauses, Claire Mandin, Véronique Brunaud, José Caius, Ludivine Soubigou-Taconnat, José Almeida-Falcon, Catherine Bastien, Vanina Benoit, Guillaume Bodineau, Nathalie Boizot, Corinne Buret, Jean-Paul Charpentier, Annabelle Déjardin, Alain Delaunay…
    Citation: BMC Research Notes 2023 16:248
  15. The genomic response and the role of genetic variants in hypoxia condition are always interesting issues about adaption pathways at genomic level. Herein, we carried out a comparative genomic study between hig...

    Authors: Atieh Moradi, Hamed Kharrati-Koopaee, Morteza Fardi, Mehdi Farahmandzadeh and Fatemeh Nowroozi
    Citation: BMC Research Notes 2023 16:225
  16. This release note describes the Maize GxE project datasets within the Genomes to Fields (G2F) Initiative. The Maize GxE project aims to understand genotype by environment (GxE) interactions and use the informa...

    Authors: Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Alden Perkins, Dylan L Schoemaker, Martin Costa, Kathryn J. Michel, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards…
    Citation: BMC Research Notes 2023 16:219
  17. South Africa is experiencing both HIV and hypertension epidemics. Data were compiled for a study to identify effects of HIV and high systolic blood pressure on mortality risk among people aged 40-plus in a rur...

    Authors: Brian Houle, Samuel J Clark, Chodziwadziwa W Kabudula, F Xavier Gómez-Olivé, Nicole Angotti, Enid Schatz, Andrea M Tilstra, Sanyu A Mojola and Jane Menken
    Citation: BMC Research Notes 2023 16:213
  18. The glucocorticoid receptor (GR) is a well-studied, ligand-activated transcription factor and a common target of anti-inflammatory treatments. Recently, several studies have drawn attention the effects of bind...

    Authors: Nickolaus C. Lammer, Mary A. Allen, Robert T. Batey and Deborah S. Wuttke
    Citation: BMC Research Notes 2023 16:181
  19. In order to provide a better insight into the functional capacity of the human gut microbiome, we isolated a novel bacterium, “Candidatus Intestinicoccus colisanans” gen. nov. sp. nov., and performed whole genome...

    Authors: Joyce Zhou, Joel A Boyd, Bozica Nyeverecz, Charlotte Vivian, Nicola Angel, David L A Wood, Philip Hugenholtz, Gene W Tyson, Lutz Krause and Páraic Ó Cuív
    Citation: BMC Research Notes 2023 16:174
  20. The ability to form biofilm is considered as one of major virulence factors of Candida albicans, as biofilms form growth confers antifungal resistance and facilitate immune evasion. It is intriguing to understand...

    Authors: Gajanan Zore, Mazen Abdulghani, Rubina Kazi, Amruta Shelar and Rajendra Patil
    Citation: BMC Research Notes 2023 16:155
  21. Animal movement is an important factor in the transmission of infectious diseases among livestock. A better understanding of animal movement characteristics provides a more reliable estimation of disease sprea...

    Authors: Yoshinori Murato, Yoko Hayama, Sonoko Kondo, Kotaro Sawai, Emi Yamaguchi and Takehisa Yamamoto
    Citation: BMC Research Notes 2023 16:153
  22. The National Registry of Healthcare Facilities is a system with the registry of every healthcare facility in Brazil with information on the capacity building and healthcare workforce regarding its public or pr...

    Authors: Rebecca Salles, Victor de Paula Dornellas Ribeiro, Raquel Gritz, Carlos Leonardo Souza Cardoso, Balthazar Paixão, Lucas Carraro, Sérgio Ricardo de Borba Cruz, Vinicius Kreischer, Carmen Lúcia Corrêa Bonifácio, Raphael de Freitas Saldanha, Gabriel Souto, Matheus Miloski, Leandro Zirondi, Gizelton Pereira Alencar, Ariane Camilo Pinheiro Alves, Nelson Niero Neto…
    Citation: BMC Research Notes 2023 16:151
  23. Surveillance of infant and fetal deaths is of paramount importance in thinking about government strategies to reduce these rates, provide greater visibility of these mortality figures in the country, enable th...

    Authors: Gabriel Souto, Matheus Miloski, Carlos Leonardo Souza Cardoso, Vinicius Kreischer, Balthazar Paixão, Victor de Paula Dornellas Ribeiro, Raquel Gritz, Lucas Carraro, Sérgio Ricardo de Borba Cruz, Carmen Lúcia Corrêa Bonifácio, Raphael de Freitas Saldanha, Leandro Zirondi, Gizelton Pereira Alencar, Ariane Camilo Pinheiro Alves, Nelson Niero Neto, Rebecca Salles…
    Citation: BMC Research Notes 2023 16:149
  24. The Genomes to Fields (G2F) 2022 Maize Genotype by Environment (GxE) Prediction Competition aimed to develop models for predicting grain yield for the 2022 Maize GxE project field trials, leveraging the datase...

    Authors: Dayane Cristina Lima, Jacob D. Washburn, José Ignacio Varela, Qiuyue Chen, Joseph L. Gage, Maria Cinta Romay, James Holland, David Ertl, Marco Lopez-Cruz, Fernando M. Aguate, Gustavo de los Campos, Shawn Kaeppler, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards…
    Citation: BMC Research Notes 2023 16:148
  25. This article introduces the Climate-related Financial Policies Database and provides statistics on its main indicators. The database records many aspects of green financial policymaking for 74 nations for the ...

    Authors: Paola D’Orazio
    Citation: BMC Research Notes 2023 16:137
  26. Tablet manufacturing development is costly, laborious, and time-consuming. Technologies related to artificial intelligence like ,predictive model ,can be used in the control process to facilitate and accelerat...

    Authors: Mehri Momeni, Saleh Rakhshani, Mohammadreza Abbaspour, Faezeh Alizadeh, Nafiseh Sheikhi, Faezeh GhorbanZadeh, Zahra Habibi and Hamed Tabesh
    Citation: BMC Research Notes 2023 16:131
  27. We present 16s rRNA gene sequencing (V1-V2 region) and sample data from a pilot observational cohort study to describe the gut microbiota dynamics of subjects with latent tuberculosis infection (LTBI) treated ...

    Authors: Marie Nancy Séraphin, Julia Bellot, Charles A. Peloquin and Volker Mai
    Citation: BMC Research Notes 2023 16:100
  28. The unprecedented nature of COVID-19 pandemic lockdown order projected to contain the pandemic and the global use of the police to enforce the order has necessitated the investigation of public (non-compliant)...

    Authors: Aliu Oladimeji Shodunke, Sodiq Abiodun Oladipupo, Sheriffdeen Olasunkanmi Adeoti, Abdulgafar Abidemi Olorede, Adebusayo Joel Alowolodu, Oriyomi Oluwasegun Seriki, Ayobami Habeeb Akindele, Isiaka Adam Folorunsho, Glory David Adebayo and Onyinye Faith Mbanefo
    Citation: BMC Research Notes 2023 16:79
  29. The data presented in this note were collected during a multi-year project conducted in the context of large-enrollment introductory biology course at a large private R-1 research institution in the Northeaste...

    Authors: Mariah C. Maxwell, Julia J. Snyder, Ryan D. P. Dunk, Jeremy D. Sloane, Isabella Cannon and Jason R. Wiles
    Citation: BMC Research Notes 2023 16:73
  30. Primary health care builds the backbone of an effective healthcare system and can improve population health, reduce cost growth, and lessen inequality. We offer a machine-readable and open-access dataset on pr...

    Authors: Ronaldo Fernandes Santos Alves, Cristiano Siqueira Boccolini, Lais Ribeiro Baroni and Patricia de Moraes Mello Boccolini
    Citation: BMC Research Notes 2023 16:63
  31. Tomatoes are the most widely consumed fruit vegetable and are relatively easy to cultivate. However, an increase in temperature causes some plants to respond with a decrease in fruit production. So, it is nece...

    Authors: Wahyu Muhammad Yuha Lubis, M Adrian, Nurul Jadid, Ani Widiastuti, Hiroshi Ezura, Syariful Mubarok, Dhika Prita Hapsari, Roedhy Poerwanto and Deden Derajat Matra
    Citation: BMC Research Notes 2023 16:40
  32. Pearl millet (Pennisetum glaucum) is a cereal crop that is tolerant to a high temperature, a drought and a nutrient-poor condition. Characterizing pearl millet proteins can help to improve productivity of pearl m...

    Authors: Yingwei Qu, Ambika Dudhate, Harshraj Subhash Shinde, Tetsuo Takano and Daisuke Tsugama
    Citation: BMC Research Notes 2023 16:38
  33. Cell-surface antigen screening was performed on human fetal liver cells using flow cytometry. The goal was to provide proteomic expression data on a number of human fetal liver cell populations that can inform...

    Authors: Marcus O. Muench and Christopher Nosworthy
    Citation: BMC Research Notes 2022 15:358
  34. This study is performed in the frame of a bigger study dedicated to genomics and transcriptomics of parthenogenesis in vertebrates. Among vertebrates, obligate parthenogenesis was first described in the lizard...

    Authors: Sergei S. Ryakhovsky, Daria V. Zhernakova, Vitaly I. Korchagin, Andrey A. Vergun, Anastasiya E. Girnyk, Victoria A. Dikaya, Marine S. Arakelyan, Aleksey S. Komissarov and Alexey P. Ryskov
    Citation: BMC Research Notes 2022 15:345
  35. Canadian regulations have made it challenging for the international medical graduates (IMGs) to get jobs in their original profession as physicians. Consequently, alternative careers are gaining interest among...

    Authors: Saif Sikdar, Nashit Chowdhury, Deidre Lake and Tanvir C. Turin
    Citation: BMC Research Notes 2022 15:336
  36. To assess the effect of internet-based counselling with a cognitive-behavioural approach on symptom severity of women with premenstrual syndrome (PMS) and their quality of life during the perimenstrual and lat...

    Authors: Sanam Borji-Navan, Sakineh Mohammad-Alizadeh-Charandabi, Khalil Esmaeilpour and Mojgan Mirghafourvand
    Citation: BMC Research Notes 2022 15:324
  37. Crayfish plague disease, caused by the oomycete pathogen Aphanomyces astaci represents one of the greatest risks for the biodiversity of the freshwater crayfish. This data article covers the de novo transcriptome...

    Authors: Ljudevit Luka Boštjančić, Caterina Francesconi, Christelle Rutz, Lucien Hoffbeck, Laetitia Poidevin, Arnaud Kress, Japo Jussila, Jenny Makkonen, Barbara Feldmeyer, Miklós Bálint, Klaus Schwenk, Odile Lecompte and Kathrin Theissinger
    Citation: BMC Research Notes 2022 15:281

    The Research article to this article has been published in BMC Genomics 2022 23:600

  38. Causal mutations for major genes that underlie a broad range of morphological traits are often located within exons of genes that then affect protein functions. Non-model organism genetic studies are not easy ...

    Authors: Nathalie Iannuccelli, Julien Sarry, Yvon Billon, Patrick Aymard, Virginie Helies, Cédric Cabau, Cécile Donnadieu and Julie Demars
    Citation: BMC Research Notes 2022 15:282
  39. Robotic systems are moving toward more interaction with the environment, which requires improving environmental perception methods. The concept of primitive objects simplified the perception of the environment...

    Authors: Alireza Makki, Alireza Hadi, Bahram Tarvirdizadeh and Mehdi Teimouri
    Citation: BMC Research Notes 2022 15:265