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Daphnia: the companion papers for the genome sequence

Collection published: 3 April 2009

Last updated: 4 February 2011

This thematic series of companion papers constitutes the initial exploration of the genome biology of the waterflea (Daphnia) building on the first complete crustacean genome sequence. This series includes contributions from members of the Daphnia Genomics Consortium.

Daphnia is a versatile model system to investigate fundamental mechanisms of inheritance and development, cellular function, physiological systems, immunity response, disease, macromolecular structure/function relationships and the genetic basis of complex phenotypic traits. An extensive literature documenting physiological and ecological diversity make Daphnia an ideal model to study the genetic architecture of phenotypic variation in natural populations and the evolution of genome structure/function relationships in aquatic environments.

		Commentary Not just another genome Diethard Tautz BMC Biology 2011, 9:8 (4 February 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The genome of Daphnia pulex reveals a surprising number of novel genes compared with other arthropod genomes. Tautz suggests how environmental factors and life-cycle quirks may explain this remarkable genomic plasticity, and consequent rate of adaptation, in Daphnia.
		Research article Evolution of the nuclear ribosomal DNA intergenic spacer in four species of the Daphnia pulex complex Cheryl D Ambrose, Teresa J Crease BMC Genetics 2011, 12:13 (24 January 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Simple sequence repeat variation in the Daphnia pulex genome Way Sung, Abraham Tucker, R Daniel Bergeron, Michael Lynch, W Kelley Thomas BMC Genomics 2010, 11:691 (3 December 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation Ralf Janssen, Martine Le Gouar, Matthias Pechmann, Francis Poulin, Renata Bolognesi, Evelyn E Schwager, Corinna Hopfen, John K Colbourne, Graham E Budd, Susan J Brown, Nikola-Michael Prpic, Carolin Kosiol, Michel Vervoort, Wim GM Damen, Guillaume Balavoine, Alistair P McGregor BMC Evolutionary Biology 2010, 10:374 (1 December 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Unusual duplication of the insulin-like receptor in the crustacean Daphnia pulex Philippe Boucher, Delphine Ditlecadet, Caroline Dubé, France Dufresne BMC Evolutionary Biology 2010, 10:305 (12 October 2010) Abstract \| Full text \| PDF \| PubMed
		Research article The first-generation Daphnia magna linkage map Jarkko Routtu, Bastiaan Jansen, Isabelle Colson, Luc De Meester, Dieter Ebert BMC Genomics 2010, 11:508 (22 September 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article LTR retroelements in the genome of Daphnia pulex Mina Rho, Sarah Schaack, Xiang Gao, Sun Kim, Michael Lynch, Haixu Tang BMC Genomics 2010, 11:425 (9 July 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Predator-induced defences in Daphnia pulex: Selection and evaluation of internal reference genes for gene expression studies with real-time PCR Katina I Spanier, Florian Leese, Christoph Mayer, John K Colbourne, Don Gilbert, Michael E Pfrender, Ralph Tollrian BMC Molecular Biology 2010, 11:50 (29 June 2010) Abstract \| Full text \| PDF \| PubMed
		Commentary Ecological genomics: steps towards unraveling the genetic basis of inducible defenses in Daphnia Ralph Tollrian, Florian Leese BMC Biology 2010, 8:51 (7 May 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Daphnia display remarkable phenotypic plasticity in the face of varying risks of predation; Tollrian and Leese discuss recent BMC papers exploring the genetic profiles of these adaptations.
		Research DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex Sarah Schaack, Eunjin Choi, Michael Lynch, Ellen J Pritham Genome Biology 2010, 11:R46 (30 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary Transposable elements in Daphnia pulex are identified and the impact of sex on their evolution is experimentally assessed
		Research article Gene up-regulation in response to predator kairomones in the water flea, Daphnia pulex Hitoshi Miyakawa, Maki Imai, Naoki Sugimoto, Yuki Ishikawa, Asano Ishikawa, Hidehiko Ishigaki, Yasukazu Okada, Satoshi Miyazaki, Shigeyuki Koshikawa, Richard Cornette, Toru Miura BMC Developmental Biology 2010, 10:45 (30 April 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach Christoph Mayer, Florian Leese, Ralph Tollrian BMC Genomics 2010, 11:277 (30 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article A survey of well conserved families of C2H2 zinc-finger genes in Daphnia Arun Seetharam, Yang Bai, Gary W Stuart BMC Genomics 2010, 11:276 (30 April 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach Ajna S Rivera, M Sabrina Pankey, David C Plachetzki, Carlos Villacorta, Anna E Syme, Jeanne M Serb, Angela R Omilian, Todd H Oakley BMC Evolutionary Biology 2010, 10:123 (30 April 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Target gene approaches: Gene expression in Daphnia magna exposed to predator-borne kairomones or to microcystin-producing and microcystin-free Microcystis aeruginosa Anke Schwarzenberger, Cornelius Courts, Eric von Elert BMC Genomics 2009, 10:527 (16 November 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex Susanne A Thomson, William S Baldwin, Ying H Wang, Gwijun Kwon, Gerald A LeBlanc BMC Genomics 2009, 10:500 (28 October 2009) Abstract \| Full text \| PDF \| PubMed
		Research article The genome sequence of the protostome Daphnia pulex encodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria Karen HS Wilson BMC Evolutionary Biology 2009, 9:243 (6 October 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 2 comments \| F1000 Biology
		Short Report Intragenic tandem repeats in Daphnia magna: structure, function and distribution Isabelle Colson, Louis Du Pasquier, Dieter Ebert BMC Research Notes 2009, 2:206 (6 October 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The components of the Daphnia pulex immune system as revealed by complete genome sequencing Seanna J McTaggart, Claire Conlon, John K Colbourne, Mark L Blaxter, Tom J Little BMC Genomics 2009, 10:175 (22 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Physiological responses of Daphnia pulex to acid stress Anna K Weber, Ralph Pirow BMC Physiology 2009, 9:9 (21 April 2009) Abstract \| Full text \| PDF \| PubMed
		Research article Acclimatory responses of the Daphnia pulex proteome to environmental changes. II. Chronic exposure to different temperatures (10 and 20°C) mainly affects protein metabolism Susanne Schwerin, Bettina Zeis, Tobias Lamkemeyer, Rüdiger J Paul, Marita Koch, Johannes Madlung, Claudia Fladerer, Ralph Pirow BMC Physiology 2009, 9:8 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors D Carolina Peñalva-Arana, Michael Lynch, Hugh M Robertson BMC Evolutionary Biology 2009, 9:79 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution Andrew M Schurko, John M Logsdon, Brian D Eads BMC Evolutionary Biology 2009, 9:78 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Acclimatory responses of the Daphnia pulex proteome to environmental changes. I. Chronic exposure to hypoxia affects the oxygen transport system and carbohydrate metabolism Bettina Zeis, Tobias Lamkemeyer, Rüdiger J Paul, Frank Nunes, Susanne Schwerin, Marita Koch, Wolfgang Schütz, Johannes Madlung, Claudia Fladerer, Ralph Pirow BMC Physiology 2009, 9:7 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software ESTPiper – a web-based analysis pipeline for expressed sequence tags Zuojian Tang, Jeong-Hyeon Choi, Chris Hemmerich, Ankita Sarangi, John K Colbourne, Qunfeng Dong BMC Genomics 2009, 10:174 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins Florian Odronitz, Sebastian Becker, Martin Kollmar BMC Genomics 2009, 10:173 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Comparative metagenomics of Daphnia symbionts Weihong Qi, Guang Nong, James F Preston, Frida Ben-Ami, Dieter Ebert BMC Genomics 2009, 10:172 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia Thomas Fröhlich, Georg J Arnold, Rainer Fritsch, Tobias Mayr, Christian Laforsch BMC Genomics 2009, 10:171 (21 April 2009) Abstract \| Full text \| PDF \| PubMed
		Research article The ABC transporter gene family of Daphnia pulex Armin Sturm, Phil Cunningham, Michael Dean BMC Genomics 2009, 10:170 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The cytochrome P450 (CYP) gene superfamily in Daphnia pulex William S Baldwin, Peter B Marko, David R Nelson BMC Genomics 2009, 10:169 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article D- and L-lactate dehydrogenases during invertebrate evolution Melania E Cristescu, David J Innes, Jonathon H Stillman, Teresa J Crease BMC Evolutionary Biology 2008, 8:268 (1 October 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research Outlining eicosanoid biosynthesis in the crustacean Daphnia Lars-Henrik Heckmann, Richard M Sibly, Martijn JTN Timmermans, Amanda Callaghan Frontiers in Zoology 2008, 5:11 (14 July 2008) Abstract \| Full text \| PDF \| PubMed
		Research article Daphnia Halloween genes that encode cytochrome P450s mediating the synthesis of the arthropod molting hormone: Evolutionary implications Kim F Rewitz, Lawrence I Gilbert BMC Evolutionary Biology 2008, 8:60 (25 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research Systems biology meets stress ecology: linking molecular and organismal stress responses in Daphnia magna Lars-Henrik Heckmann, Richard M Sibly, Richard Connon, Helen L Hooper, Thomas H Hutchinson, Steve J Maund, Christopher J Hill, Anthony Bouetard, Amanda Callaghan Genome Biology 2008, 9:R40 (21 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A study of the transcriptomic and phenotypic stress responses of the model crustacean Daphnia magna following exposure to ibuprofen shows similarities in its mode of action between vertebrates and invertebrates.
		Research article Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins Joseph R Shaw, John K Colbourne, Jennifer C Davey, Stephen P Glaholt, Thomas H Hampton, Celia Y Chen, Carol L Folt, Joshua W Hamilton BMC Genomics 2007, 8:477 (21 December 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology \| Editor’s summary A new cDNA microarray for the water flea Daphnia pulex, a useful environmental indicator species, has helped uncover genes responding to cadmium including three new genes coding for the metal detoxification protein metallothionein.
		Research article Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex Brian D Eads, John K Colbourne, Elizabeth Bohuski, Justen Andrews BMC Genomics 2007, 8:464 (18 December 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes John K Colbourne, Brian D Eads, Joseph Shaw, Elizabeth Bohuski, Darren J Bauer, Justen Andrews BMC Genomics 2007, 8:217 (6 July 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Meeting report Shelling out for genomics Timothy S McClintock, Charles D Derby Genome Biology 2006, 7:312 (20 April 2006) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report on the symposium 'Genomic and Proteomic Approaches to Crustacean Biology' held as part of the Society for Integrative and Comparative Biology 2006 Annual Meeting, Orlando, USA, 4-8 January 2006.
		Database wFleaBase: the Daphnia genome database John K Colbourne, Vasanth R Singan, Don G Gilbert BMC Bioinformatics 2005, 6:45 (7 March 2005) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central

		Commentary Not just another genome Diethard Tautz BMC Biology 2011, 9:8 (4 February 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The genome of Daphnia pulex reveals a surprising number of novel genes compared with other arthropod genomes. Tautz suggests how environmental factors and life-cycle quirks may explain this remarkable genomic plasticity, and consequent rate of adaptation, in Daphnia.
		Research article Evolution of the nuclear ribosomal DNA intergenic spacer in four species of the Daphnia pulex complex Cheryl D Ambrose, Teresa J Crease BMC Genetics 2011, 12:13 (24 January 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Simple sequence repeat variation in the Daphnia pulex genome Way Sung, Abraham Tucker, R Daniel Bergeron, Michael Lynch, W Kelley Thomas BMC Genomics 2010, 11:691 (3 December 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation Ralf Janssen, Martine Le Gouar, Matthias Pechmann, Francis Poulin, Renata Bolognesi, Evelyn E Schwager, Corinna Hopfen, John K Colbourne, Graham E Budd, Susan J Brown, Nikola-Michael Prpic, Carolin Kosiol, Michel Vervoort, Wim GM Damen, Guillaume Balavoine, Alistair P McGregor BMC Evolutionary Biology 2010, 10:374 (1 December 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Unusual duplication of the insulin-like receptor in the crustacean Daphnia pulex Philippe Boucher, Delphine Ditlecadet, Caroline Dubé, France Dufresne BMC Evolutionary Biology 2010, 10:305 (12 October 2010) Abstract \| Full text \| PDF \| PubMed
		Research article The first-generation Daphnia magna linkage map Jarkko Routtu, Bastiaan Jansen, Isabelle Colson, Luc De Meester, Dieter Ebert BMC Genomics 2010, 11:508 (22 September 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article LTR retroelements in the genome of Daphnia pulex Mina Rho, Sarah Schaack, Xiang Gao, Sun Kim, Michael Lynch, Haixu Tang BMC Genomics 2010, 11:425 (9 July 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Predator-induced defences in Daphnia pulex: Selection and evaluation of internal reference genes for gene expression studies with real-time PCR Katina I Spanier, Florian Leese, Christoph Mayer, John K Colbourne, Don Gilbert, Michael E Pfrender, Ralph Tollrian BMC Molecular Biology 2010, 11:50 (29 June 2010) Abstract \| Full text \| PDF \| PubMed
		Commentary Ecological genomics: steps towards unraveling the genetic basis of inducible defenses in Daphnia Ralph Tollrian, Florian Leese BMC Biology 2010, 8:51 (7 May 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Daphnia display remarkable phenotypic plasticity in the face of varying risks of predation; Tollrian and Leese discuss recent BMC papers exploring the genetic profiles of these adaptations.
		Research DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex Sarah Schaack, Eunjin Choi, Michael Lynch, Ellen J Pritham Genome Biology 2010, 11:R46 (30 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary Transposable elements in Daphnia pulex are identified and the impact of sex on their evolution is experimentally assessed
		Research article Gene up-regulation in response to predator kairomones in the water flea, Daphnia pulex Hitoshi Miyakawa, Maki Imai, Naoki Sugimoto, Yuki Ishikawa, Asano Ishikawa, Hidehiko Ishigaki, Yasukazu Okada, Satoshi Miyazaki, Shigeyuki Koshikawa, Richard Cornette, Toru Miura BMC Developmental Biology 2010, 10:45 (30 April 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach Christoph Mayer, Florian Leese, Ralph Tollrian BMC Genomics 2010, 11:277 (30 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article A survey of well conserved families of C2H2 zinc-finger genes in Daphnia Arun Seetharam, Yang Bai, Gary W Stuart BMC Genomics 2010, 11:276 (30 April 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach Ajna S Rivera, M Sabrina Pankey, David C Plachetzki, Carlos Villacorta, Anna E Syme, Jeanne M Serb, Angela R Omilian, Todd H Oakley BMC Evolutionary Biology 2010, 10:123 (30 April 2010) Abstract \| Full text \| PDF \| PubMed
		Research article Target gene approaches: Gene expression in Daphnia magna exposed to predator-borne kairomones or to microcystin-producing and microcystin-free Microcystis aeruginosa Anke Schwarzenberger, Cornelius Courts, Eric von Elert BMC Genomics 2009, 10:527 (16 November 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex Susanne A Thomson, William S Baldwin, Ying H Wang, Gwijun Kwon, Gerald A LeBlanc BMC Genomics 2009, 10:500 (28 October 2009) Abstract \| Full text \| PDF \| PubMed
		Research article The genome sequence of the protostome Daphnia pulex encodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria Karen HS Wilson BMC Evolutionary Biology 2009, 9:243 (6 October 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 2 comments \| F1000 Biology
		Short Report Intragenic tandem repeats in Daphnia magna: structure, function and distribution Isabelle Colson, Louis Du Pasquier, Dieter Ebert BMC Research Notes 2009, 2:206 (6 October 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The components of the Daphnia pulex immune system as revealed by complete genome sequencing Seanna J McTaggart, Claire Conlon, John K Colbourne, Mark L Blaxter, Tom J Little BMC Genomics 2009, 10:175 (22 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Physiological responses of Daphnia pulex to acid stress Anna K Weber, Ralph Pirow BMC Physiology 2009, 9:9 (21 April 2009) Abstract \| Full text \| PDF \| PubMed
		Research article Acclimatory responses of the Daphnia pulex proteome to environmental changes. II. Chronic exposure to different temperatures (10 and 20°C) mainly affects protein metabolism Susanne Schwerin, Bettina Zeis, Tobias Lamkemeyer, Rüdiger J Paul, Marita Koch, Johannes Madlung, Claudia Fladerer, Ralph Pirow BMC Physiology 2009, 9:8 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors D Carolina Peñalva-Arana, Michael Lynch, Hugh M Robertson BMC Evolutionary Biology 2009, 9:79 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution Andrew M Schurko, John M Logsdon, Brian D Eads BMC Evolutionary Biology 2009, 9:78 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Acclimatory responses of the Daphnia pulex proteome to environmental changes. I. Chronic exposure to hypoxia affects the oxygen transport system and carbohydrate metabolism Bettina Zeis, Tobias Lamkemeyer, Rüdiger J Paul, Frank Nunes, Susanne Schwerin, Marita Koch, Wolfgang Schütz, Johannes Madlung, Claudia Fladerer, Ralph Pirow BMC Physiology 2009, 9:7 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software ESTPiper – a web-based analysis pipeline for expressed sequence tags Zuojian Tang, Jeong-Hyeon Choi, Chris Hemmerich, Ankita Sarangi, John K Colbourne, Qunfeng Dong BMC Genomics 2009, 10:174 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins Florian Odronitz, Sebastian Becker, Martin Kollmar BMC Genomics 2009, 10:173 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Comparative metagenomics of Daphnia symbionts Weihong Qi, Guang Nong, James F Preston, Frida Ben-Ami, Dieter Ebert BMC Genomics 2009, 10:172 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia Thomas Fröhlich, Georg J Arnold, Rainer Fritsch, Tobias Mayr, Christian Laforsch BMC Genomics 2009, 10:171 (21 April 2009) Abstract \| Full text \| PDF \| PubMed
		Research article The ABC transporter gene family of Daphnia pulex Armin Sturm, Phil Cunningham, Michael Dean BMC Genomics 2009, 10:170 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The cytochrome P450 (CYP) gene superfamily in Daphnia pulex William S Baldwin, Peter B Marko, David R Nelson BMC Genomics 2009, 10:169 (21 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article D- and L-lactate dehydrogenases during invertebrate evolution Melania E Cristescu, David J Innes, Jonathon H Stillman, Teresa J Crease BMC Evolutionary Biology 2008, 8:268 (1 October 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research Outlining eicosanoid biosynthesis in the crustacean Daphnia Lars-Henrik Heckmann, Richard M Sibly, Martijn JTN Timmermans, Amanda Callaghan Frontiers in Zoology 2008, 5:11 (14 July 2008) Abstract \| Full text \| PDF \| PubMed
		Research article Daphnia Halloween genes that encode cytochrome P450s mediating the synthesis of the arthropod molting hormone: Evolutionary implications Kim F Rewitz, Lawrence I Gilbert BMC Evolutionary Biology 2008, 8:60 (25 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research Systems biology meets stress ecology: linking molecular and organismal stress responses in Daphnia magna Lars-Henrik Heckmann, Richard M Sibly, Richard Connon, Helen L Hooper, Thomas H Hutchinson, Steve J Maund, Christopher J Hill, Anthony Bouetard, Amanda Callaghan Genome Biology 2008, 9:R40 (21 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A study of the transcriptomic and phenotypic stress responses of the model crustacean Daphnia magna following exposure to ibuprofen shows similarities in its mode of action between vertebrates and invertebrates.
		Research article Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins Joseph R Shaw, John K Colbourne, Jennifer C Davey, Stephen P Glaholt, Thomas H Hampton, Celia Y Chen, Carol L Folt, Joshua W Hamilton BMC Genomics 2007, 8:477 (21 December 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology \| Editor’s summary A new cDNA microarray for the water flea Daphnia pulex, a useful environmental indicator species, has helped uncover genes responding to cadmium including three new genes coding for the metal detoxification protein metallothionein.
		Research article Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex Brian D Eads, John K Colbourne, Elizabeth Bohuski, Justen Andrews BMC Genomics 2007, 8:464 (18 December 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes John K Colbourne, Brian D Eads, Joseph Shaw, Elizabeth Bohuski, Darren J Bauer, Justen Andrews BMC Genomics 2007, 8:217 (6 July 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Meeting report Shelling out for genomics Timothy S McClintock, Charles D Derby Genome Biology 2006, 7:312 (20 April 2006) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report on the symposium 'Genomic and Proteomic Approaches to Crustacean Biology' held as part of the Society for Integrative and Comparative Biology 2006 Annual Meeting, Orlando, USA, 4-8 January 2006.
		Database wFleaBase: the Daphnia genome database John K Colbourne, Vasanth R Singan, Don G Gilbert BMC Bioinformatics 2005, 6:45 (7 March 2005) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central