BioMed Central | Search results for: metagenomics All words All fields (full text)

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487 item(s) found for: metagenomics (All words) in All fields (full text)

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	1.	Research article Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study Mora Murri, Isabel Leiva, Juan Miguel Gomez-Zumaquero, Fernando Cardona, Federico Soriguer, Francisco J Tinahones, Maria Isabel Queipo-Ortuno BMC Medicine 2013, 11:46 (21 February 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary Gut microbiota are present at lower quantity and have different composition in children with type 1 diabetes compared with healthy children, possibly due to altered gut permeability, and modification of these bacteria could control diabetes development.
	2.	Research De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes Aaron Weimann, Yulia Trukhina, Phillip B Pope, Sebastian GA Konietzny, Alice C McHardy Biotechnology for Biofuels 2013, 6:24 (15 February 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Review The 3rd DBCLS BioHackathon: improving life science data integration with semantic Web technologies Toshiaki Katayama, Mark D Wilkinson, Gos Micklem, Shuichi Kawashima, Atsuko Yamaguchi, Mitsuteru Nakao, Yasunori Yamamoto, Shinobu Okamoto, Kenta Oouchida, Hong-Woo Chun, Jan Aerts, Hammad Afzal, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Francois Belleau, Jerven Bolleman, Raoul Jean Bonnal, Brad Chapman, Peter Cock, Tore Eriksson, Paul Gordon, Naohisa Goto, Kazuhiro Hayashi, Heiko Horn, Ryosuke Ishiwata, Eli Kaminuma, Arek Kasprzyk, Hideya Kawaji, Nobuhiro Kido Journal of Biomedical Semantics 2013, 4:6 (11 February 2013) Abstract \| Provisional PDF \| PubMed
	4.	Research article Assessing the resistance and bioremediation ability of selected bacterial and protozoan species to heavy metals in metal-rich industrial wastewater Ilunga Kamika, Maggy NB Momba BMC Microbiology 2013, 13:28 (6 February 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Methodology CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota James Robert White, Cynthia Maddox, Owen White, Samuel V Angiuoli, W Florian Fricke Microbiome 2013, 1:6 (4 February 2013) Abstract \| Full text \| PDF
	6.	Research Estimation of viral richness from shotgun metagenomes using a frequency count approach Heather K Allen, John Bunge, James A Foster, Darrell O Bayles, Thaddeus B Stanton Microbiome 2013, 1:5 (4 February 2013) Abstract \| Full text \| PDF
	7.	Research Bacterial diversity of the rock-water interface in an East Antarctic freshwater ecosystem, Lake Tawani(P)^† Jonathan P Huang, Ashit K Swain, Robert W Thacker, Rasik Ravindra, Dale T Andersen, Asim K Bej Aquatic Biosystems 2013, 9:4 (1 February 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Software FANTOM: Functional and taxonomic analysis of metagenomes Kemal Sanli, Fredrik H Karlsson, Intawat Nookaew, Jens Nielsen BMC Bioinformatics 2013, 14:38 (1 February 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Comment Next-generation phylogenomics Cheong Xin Chan, Mark A Ragan Biology Direct 2013, 8:3 (22 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Highly scalable phylogenomic approaches are needed to make evolutionary sense of the ongoing deluge of sequence data; these approaches can be free from multiple sequence alignment.
	10.	Research article Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to ‘Candidatus Liberibacter asiaticus’ infection Zhi-Liang Zheng, Yihong Zhao BMC Genomics 2013, 14:27 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Methodology Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut Elaine O Petrof, Gregory B Gloor, Stephen J Vanner, Scott J Weese, David Carter, Michelle C Daigneault, Eric M Brown, Kathleen Schroeter, Emma Allen-Vercoe Microbiome 2013, 1:3 (9 January 2013) Abstract \| Full text \| PDF \| Editor’s summary A super-probiotic synthetic stool, composed of 33 different bacterial strains, was developed and used to treat two patients with severe C. difficile infection. The probiotic bacteria could still be detected up to six months after inoculation.
	12.	Research Selecting age-related functional characteristics in the human gut microbiome Yemin Lan, Andres Kriete, Gail L Rosen Microbiome 2013, 1:2 (9 January 2013) Abstract \| Full text \| PDF
	13.	Methodology Microbe observation and cultivation array (MOCA) for cultivating and analyzing environmental microbiota Weimin Gao, Dena Navarroli, Jared Naimark, Weiwen Zhang, Shih-hui Chao, Deirdre R Meldrum Microbiome 2013, 1:4 (9 January 2013) Abstract \| Full text \| PDF \| Editor’s summary A new system to cultivate bacteria is described, which consists of a Petri dish that contains an array of droplets as cultivation chambers and provides a cost-efficient platform for isolation of bacteria from natural environments.
	14.	Methodology article PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data David G Weissbrodt, Noam Shani, Lucas Sinclair, Grégory Lefebvre, Pierre Rossi, Julien Maillard, Jacques Rougemont, Christof Holliger BMC Microbiology 2012, 12:306 (27 December 2012) Abstract \| Full text \| PDF \| PubMed
	15.	Research article Comparison of metagenomic samples using sequence signatures Bai Jiang, Kai Song, Jie Ren, Minghua Deng, Fengzhu Sun, Xuegong Zhang BMC Genomics 2012, 13:730 (27 December 2012) Abstract \| Full text \| PDF \| PubMed
	16.	Research article Defining bacterial species in the genomic era: insights from the genus Acinetobacter Jacqueline Z-M Chan, Mihail R Halachev, Nicholas J Loman, Chrystala Constantinidou, Mark J Pallen BMC Microbiology 2012, 12:302 (23 December 2012) Abstract \| Full text \| PDF \| PubMed
	17.	Method Ray Meta: scalable de novo metagenome assembly and profiling Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette, Jacques Corbeil Genome Biology 2012, 13:R122 (22 December 2012) Abstract \| Provisional PDF \| PubMed \| Editor’s summary A scalable, de novo metagenomic assembly method that couples taxonomic and ontology profiling
	18.	Proceedings Reconstructing genome mixtures from partial adjacencies Ahmad Mahmoody, Crystal L Kahn, Benjamin J Raphael BMC Bioinformatics 2012, 13(Suppl 19):S9 (19 December 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Proceedings Compareads: comparing huge metagenomic experiments Nicolas Maillet, Claire Lemaitre, Rayan Chikhi, Dominique Lavenier, Pierre Peterlongo BMC Bioinformatics 2012, 13(Suppl 19):S10 (19 December 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Research High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems Li Yin, Li Liu, Yijun Sun, Wei Hou, Amanda C Lowe, Brent P Gardner, Marco Salemi, Wilton B Williams, William G Farmerie, John W Sleasman, Maureen M Goodenow Retrovirology 2012, 9:108 (17 December 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Deep sequencing defines HIV-1 population complexity and structure, reveals the ebb and flow of dominant and rare viral variants in the host ecosystem, and identifies an evolutionary record of low-frequency cell-associated viral V3 variants that persist for years.
	21.	Research An improved dimensionality reduction method for meta-transcriptome indexing based diseases classification Yin Wang, Yuhua Zhou, Yixue Li, Zongxin Ling, Yan Zhu, Xiaokui Guo, Hong Sun BMC Systems Biology 2012, 6(Suppl 3):S12 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research The hemicellulolytic enzyme arsenal of Thermobacillus xylanilyticus depends on the composition of biomass used for growth Harivony Rakotoarivonina, Béatrice Hermant, Nina Monthe, Caroline Rémond Microbial Cell Factories 2012, 11:159 (14 December 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Proceedings Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package Mohamed El-Kalioby, Mohamed Abouelhoda, Jan Krüger, Robert Giegerich, Alexander Sczyrba, Dennis P Wall, Peter Tonellato BMC Bioinformatics 2012, 13(Suppl 17):S22 (13 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	24.	Proceedings Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand Naraporn Somboonna, Anunchai Assawamakin, Alisa Wilantho, Sithichoke Tangphatsornruang, Sissades Tongsima BMC Genomics 2012, 13(Suppl 7):S29 (13 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25.	Proceedings FastAnnotator- an efficient transcript annotation web tool Ting-Wen Chen, Ruei-Chi Gan, Timothy H Wu, Po-Jung Huang, Cheng-Yang Lee, Yi-Ywan M Chen, Che-Chun Chen, Petrus Tang BMC Genomics 2012, 13(Suppl 7):S9 (13 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central

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