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1.
Comparative transcription analysis and toxin production of two fluoroquinolone-resistant mutants of clostridium perfringens
Sunny Park, Miseon Park, Fatemeh Rafii BMC Microbiology 2013, 13 :50 (1 March 2013)
Abstract | Provisional PDF
2.
Using a state cancer registry to recruit young breast cancer survivors and high-risk relatives: protocol of a randomized trial testing the efficacy of a targeted versus a tailored intervention to increase breast cancer screening
Maria C Katapodi, Laurel L Northouse, Ann M Schafenacker, Debra Duquette, Sonia A Duffy, David L Ronis, Beth Anderson, Nancy K Janz, Jennifer McLosky, Kara J Milliron, Sofia D Merajver, Linh M Duong, Glenn Copeland BMC Cancer 2013, 13 :97 (1 March 2013)
Abstract | Provisional PDF
3.
Evolution of land plant genes encoding L-Ala-D/L-Glu epimerases (AEEs) via horizontal gene transfer and positive selection
Zefeng Yang, Yifan Wang, Yong Zhou, Qingsong Gao, Enying Zhang, Lei Zhu, Yunyun Hu, Chenwu Xu BMC Plant Biology 2013, 13 :34 (1 March 2013)
Abstract | Provisional PDF
4.
Functional decorations: post-translational modifications and heart disease delineated by targeted proteomics
Kiersten A Liddy, Melanie Y White, Stuart J Cordwell Genome Medicine 2013, 5 :20 (28 February 2013)
Abstract | Full text | PDF
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Editor’s summary
Liddy, White and Cordwell provide an overview of protein post-translational modifications, how they affect heart disease and how they can be analyzed by proteomics.
5.
A functional genomics screen for microRNA regulators of NF-kappaB signaling
Anthony O Olarerin-George, Lauren Anton, Yih-Chii Hwang, Michal A Elovitz, John B Hogenesch BMC Biology 2013, 11 :19 (28 February 2013)
Abstract | Provisional PDF
6.
Combining heterogeneous data sources for accurate functional annotation of proteins
Artem Sokolov, Christopher Funk, Kiley Graim, Karin Verspoor, Asa Ben-Hur BMC Bioinformatics 2013, 14 (Suppl 3):S10 (28 February 2013)
Abstract | Full text | PDF
7.
Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions
Jainab Khatun, Yanbao Yu, John A Wrobel, Brian A Risk, Harsha P Gunawardena, Ashley Secrest, Wendy J Spitzer, Ling Xie, Li Wang, Xian Chen, Morgan C Giddings BMC Genomics 2013, 14 :141 (28 February 2013)
Abstract | Provisional PDF
8.
De novo transcriptomic resources for two sibling species of moths: Ostrinia nubilalis and O. scapulalis
Bernhard Gschloessl, Emmanuelle Beyne, Philippe Audiot, Denis Bourguet, Réjane Streiff BMC Research Notes 2013, 6 :73 (28 February 2013)
Abstract | Provisional PDF
9.
MicroRNA miR-30 family regulates non-attachment growth of breast cancer cells
Maria Ouzounova, Tri Vuong, Pierre-Benoit Ancey, Mylène Ferrand, Geoffroy Durand, Florence Le-Calvez Kelm, Carlo Croce, Chantal Matar, Zdenko Herceg, Hector Hernandez-Vargas BMC Genomics 2013, 14 :139 (28 February 2013)
Abstract | Provisional PDF
10.
How to inherit statistically validated annotation within BAR+ protein clusters
Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Andrea Zauli, Ivan Rossi, Rita Casadio BMC Bioinformatics 2013, 14 (Suppl 3):S4 (28 February 2013)
Abstract | Full text | PDF
11.
Function prediction from networks of local evolutionary similarity in protein structure
Serkan Erdin, Eric Venner, Andreas Lisewski, Olivier Lichtarge BMC Bioinformatics 2013, 14 (Suppl 3):S6 (28 February 2013)
Abstract | Full text | PDF
12.
A domain-centric solution to functional genomics via dcGO Predictor
Hai Fang, Julian Gough BMC Bioinformatics 2013, 14 (Suppl 3):S9 (28 February 2013)
Abstract | Full text | PDF
13.
Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex
Nadav Rappoport, Michal Linial BMC Bioinformatics 2013, 14 (Suppl 3):S11 (28 February 2013)
Abstract | Full text | PDF
14.
Protein function prediction by massive integration of evolutionary analyses and multiple data sources
Domenico Cozzetto, Daniel WA Buchan, Kevin Bryson, David T Jones BMC Bioinformatics 2013, 14 (Suppl 3):S1 (28 February 2013)
Abstract | Full text | PDF
15.
Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge
Andrew Wong, Hagit Shatkay BMC Bioinformatics 2013, 14 (Suppl 3):S14 (28 February 2013)
Abstract | Full text | PDF
16.
In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment
Meghana Chitale, Ishita K Khan, Daisuke Kihara BMC Bioinformatics 2013, 14 (Suppl 3):S2 (28 February 2013)
Abstract | Full text | PDF
17.
Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)
Zhouxi Wang, Pengcheng Yin, Joslynn S Lee, Ramya Parasuram, Srinivas Somarowthu, Mary Ondrechen BMC Bioinformatics 2013, 14 (Suppl 3):S13 (28 February 2013)
Abstract | Full text | PDF
18.
Protein function prediction using domain families
Robert Rentzsch, Christine A Orengo BMC Bioinformatics 2013, 14 (Suppl 3):S5 (28 February 2013)
Abstract | Full text | PDF
19.
PacC and pH--dependent transcriptome of the mycotrophic fungus Trichoderma virens
Naomi Trushina, Michal Levin, Prasun K Mukherjee, Benjamin A Horwitz BMC Genomics 2013, 14 :138 (28 February 2013)
Abstract | Provisional PDF
20.
Novel cancer drivers: mining the kinome
Andrew V Biankin, Sean M Grimmond Genome Medicine 2013, 5 :19 (28 February 2013)
Abstract | Full text | PDF
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Editor’s summary
Andrew Biankin and Sean Grimmond highlight a recent study using "ActiveDriver" software to differentiate driver from passenger mutations in the cancer kinome.
21.
MicroRNAs and their putative targets in Brassica napus seed maturation
Daiqing Huang, Chushin Koh, J Allan Feurtado, Edward WT Tsang, Adrian J Cutler BMC Genomics 2013, 14 :140 (28 February 2013)
Abstract | Provisional PDF
22.
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
Glenn T Howe, Jianbin Yu, Brian Knaus, Richard Cronn, Scott Kolpak, Peter Dolan, W Walter Lorenz, Jeffrey FD Dean BMC Genomics 2013, 14 :137 (28 February 2013)
Abstract | Provisional PDF
23.
Food for thought from plant and animal genomes
Emily Abrash Genome Biology 2013, 14 :302 (27 February 2013)
Abstract | Full text | PDF
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Editor’s summary
A report on the Plant and Animal Genome XXI meeting, held in San Diego, USA, January 12-16, 2013.
24.
Establishing a Southern Swedish Malignant Melanoma OMICS and Biobank Clinical Capability
Charlotte Welinder, Göran Jönsson, Christian Ingvar, Lotta Lundgren, Håkan Olsson, Thomas Breslin, Ákos Végvári, Thomas Laurell, Melinda Rezeli, Bo Jansson, Bo Baldetorp, György Marko-Varga Clinical and Translational Medicine 2013, 2 :7 (27 February 2013)
Abstract | Provisional PDF
25.
Pathway-focused bioassays and transcriptome analysis contribute to a better activity monitoring of complex herbal remedies
Angela Klein, Oliver A Wrulich, Marcel Jenny, Peter Gruber, Kathrin Becker, Dietmar Fuchs, Johanna M Gostner, Florian Überall BMC Genomics 2013, 14 :133 (27 February 2013)
Abstract | Provisional PDF