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1.
BioTile, A Perl based tool for the identification of differentially enriched regions in tiling microarray data
Jerry Guintivano, Michal Arad, Kellie LK Tamashiro, Todd D Gould, Zachary A Kaminsky BMC Bioinformatics 2013, 14 :76 (3 March 2013)
Abstract | Provisional PDF
2.
MethylPCA: a toolkit to control for confounders in methylome-wide association studies
Wenan Chen, Guimin Gao, Srilaxmi Nerella, Christina M Hultman, Patrik KE Magnusson, Patrick F Sullivan, Karolina A Aberg, Edwin JCG van den Oord BMC Bioinformatics 2013, 14 :74 (2 March 2013)
Abstract | Provisional PDF
3.
virtualArray: a R/bioconductor package to merge raw data from different microarray platforms
Andreas Heider, Rüdiger Alt BMC Bioinformatics 2013, 14 :75 (2 March 2013)
Abstract | Provisional PDF
4.
search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information
Dariusz Mrozek, Bo¿ena Ma¿ysiak-Mrozek, Artur Si¿¿nik BMC Bioinformatics 2013, 14 :73 (1 March 2013)
Abstract | Provisional PDF
5.
Identification of drug candidates for osteoporosis by computational bioinformatics analysis of gene expression profile
Guiyong Yu, Litao Wang, Yazhou Li, Zhihong Ma, Yu Li European Journal of Medical Research 2013, 18 :5 (1 March 2013)
Abstract | Provisional PDF
6.
Cancer stem cell contribution to glioblastoma invasiveness
Barbara Ortensi, Matteo Setti, Daniela Osti, Giuliana Pelicci Stem Cell Research & Therapy 2013, 4 :18 (28 February 2013)
Abstract | Full text | PDF
7.
Combining heterogeneous data sources for accurate functional annotation of proteins
Artem Sokolov, Christopher Funk, Kiley Graim, Karin Verspoor, Asa Ben-Hur BMC Bioinformatics 2013, 14 (Suppl 3):S10 (28 February 2013)
Abstract | Full text | PDF
8.
Protein function prediction using domain families
Robert Rentzsch, Christine A Orengo BMC Bioinformatics 2013, 14 (Suppl 3):S5 (28 February 2013)
Abstract | Full text | PDF
9.
MS-k NN: protein function prediction by integrating multiple data sources
Liang Lan, Nemanja Djuric, Yuhong Guo, Slobodan Vucetic BMC Bioinformatics 2013, 14 (Suppl 3):S8 (28 February 2013)
Abstract | Full text | PDF
10.
Three-Level Prediction of Protein Function by Combining Profile-Sequence Search, Profile-Profile Search, and Domain Co-Occurrence Networks
Zheng Wang, Renzhi Cao, Jianlin Cheng BMC Bioinformatics 2013, 14 (Suppl 3):S3 (28 February 2013)
Abstract | Full text | PDF
11.
Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)
Zhouxi Wang, Pengcheng Yin, Joslynn S Lee, Ramya Parasuram, Srinivas Somarowthu, Mary Ondrechen BMC Bioinformatics 2013, 14 (Suppl 3):S13 (28 February 2013)
Abstract | Full text | PDF
12.
Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge
Andrew Wong, Hagit Shatkay BMC Bioinformatics 2013, 14 (Suppl 3):S14 (28 February 2013)
Abstract | Full text | PDF
13.
Function prediction from networks of local evolutionary similarity in protein structure
Serkan Erdin, Eric Venner, Andreas Lisewski, Olivier Lichtarge BMC Bioinformatics 2013, 14 (Suppl 3):S6 (28 February 2013)
Abstract | Full text | PDF
14.
Concomitant prediction of function and fold at the domain level with GO-based profiles
Daniel Lopez, Florencio Pazos BMC Bioinformatics 2013, 14 (Suppl 3):S12 (28 February 2013)
Abstract | Full text | PDF
15.
A domain-centric solution to functional genomics via dcGO Predictor
Hai Fang, Julian Gough BMC Bioinformatics 2013, 14 (Suppl 3):S9 (28 February 2013)
Abstract | Full text | PDF
16.
Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex
Nadav Rappoport, Michal Linial BMC Bioinformatics 2013, 14 (Suppl 3):S11 (28 February 2013)
Abstract | Full text | PDF
17.
Protein function prediction by massive integration of evolutionary analyses and multiple data sources
Domenico Cozzetto, Daniel WA Buchan, Kevin Bryson, David T Jones BMC Bioinformatics 2013, 14 (Suppl 3):S1 (28 February 2013)
Abstract | Full text | PDF
18.
In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment
Meghana Chitale, Ishita K Khan, Daisuke Kihara BMC Bioinformatics 2013, 14 (Suppl 3):S2 (28 February 2013)
Abstract | Full text | PDF
19.
How to inherit statistically validated annotation within BAR+ protein clusters
Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Andrea Zauli, Ivan Rossi, Rita Casadio BMC Bioinformatics 2013, 14 (Suppl 3):S4 (28 February 2013)
Abstract | Full text | PDF
20.
Homology-based inference sets the bar high for protein function prediction
Tobias Hamp, Rebecca Kassner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane Boehm, Tatjana Braun, Maximilian Hecht, Mark Heron, Peter Hönigschmid, Thomas A Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompass, Cedric Landerer, Yannick Mahlich, Manfred Roos, Burkhard Rost BMC Bioinformatics 2013, 14 (Suppl 3):S7 (28 February 2013)
Abstract | Full text | PDF
21.
Establishing a Southern Swedish Malignant Melanoma OMICS and Biobank Clinical Capability
Charlotte Welinder, Göran Jönsson, Christian Ingvar, Lotta Lundgren, Håkan Olsson, Thomas Breslin, Ákos Végvári, Thomas Laurell, Melinda Rezeli, Bo Jansson, Bo Baldetorp, György Marko-Varga Clinical and Translational Medicine 2013, 2 :7 (27 February 2013)
Abstract | Provisional PDF
22.
Identification of germ cell-specific genes in mammalian meiotic prophase
Yunfei Li, Debjit Ray, Ping Ye BMC Bioinformatics 2013, 14 :72 (27 February 2013)
Abstract | Provisional PDF
23.
Designing and benchmarking the MULTICOM protein structure prediction system
Jilong Li, Xin Deng, Jesse Eickholt, Jianlin Cheng BMC Structural Biology 2013, 13 :2 (27 February 2013)
Abstract | Provisional PDF
| PubMed
24.
BOND: Basic OligoNucleotide Design
Lucian Ilie, Hamid Mohamadi, Geoffrey Brian Golding, William F Smyth BMC Bioinformatics 2013, 14 :69 (27 February 2013)
Abstract | Provisional PDF
25.
Evaluating the use of different positional strategies for sentence selection in biomedical literature summarization
Laura Plaza, Jorge Carrillo-de-Albornoz BMC Bioinformatics 2013, 14 :71 (27 February 2013)
Abstract | Provisional PDF