Log on / register
Feedback | Support | My details
BEAST: Bayesian evolutionary analysis by sampling trees.
Drummond AJ, Rambaut A
BMC Evol Biol 2007, 7:214
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

PubMed Central articles that cite the above article:

1.
On the Use of Bootstrapped Topologies in Coalescent-Based Bayesian MCMC Inference: A Comparison of Estimation and Computational Efficiencies.
Rodrigo AG, Tsai P, Shearman H
Evol Bioinform Online 2009, 5:97-105
 [PubMed Central] [PubMed] [Related articles]
2.
Tempo and mode of diversification of lake Tanganyika cichlid fishes.
Day JJ, Cotton JA, Barraclough TG
PLoS One 2008, 3:e1730
 [PubMed Central] [PubMed] [Related articles]
3.
Rice yellow mottle virus, an RNA plant virus, evolves as rapidly as most RNA animal viruses.
Fargette D, Pinel A, Rakotomalala M, Sangu E, Traoré O, Sérémé D, Sorho F, Issaka S, Hébrard E, Séré Y, Kanyeka Z, Konaté G
J Virol 2008 Apr, 82:3584-9
 [PubMed Central] [PubMed] [Related articles]
4.
Density-dependent cladogenesis in birds.
Phillimore AB, Price TD
PLoS Biol 2008 Mar 25, 6:e71
 [PubMed Central] [PubMed] [Related articles]
5.
Major evolutionary transitions in ant agriculture.
Schultz TR, Brady SG
Proc Natl Acad Sci U S A 2008 Apr 8, 105:5435-40
 [PubMed Central] [PubMed] [Related articles]
6.
A Bayesian evaluation of human mitochondrial substitution rates.
Endicott P, Ho SY
Am J Hum Genet 2008 Apr, 82:895-902
 [PubMed Central] [PubMed] [Related articles]
7.
The prehistory of potyviruses: their initial radiation was during the dawn of agriculture.
Gibbs AJ, Ohshima K, Phillips MJ, Gibbs MJ
PLoS One 2008, 3:e2523
 [PubMed Central] [PubMed] [Related articles]
8.
Molecular ecology and natural history of simian foamy virus infection in wild-living chimpanzees.
Liu W, Worobey M, Li Y, Keele BF, Bibollet-Ruche F, Guo Y, Goepfert PA, Santiago ML, Ndjango JB, Neel C, Clifford SL, Sanz C, Kamenya S, Wilson ML, Pusey AE, Gross-Camp N, Boesch C, Smith V, Zamma K, Huffman MA, Mitani JC, Watts DP, Peeters M, Shaw GM, Switzer WM, Sharp PM, Hahn BH
PLoS Pathog 2008 Jul, 4:e1000097
 [PubMed Central] [PubMed] [Related articles]
9.
The genomic and epidemiological dynamics of human influenza A virus.
Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC
Nature 2008 May 29, 453:615-9
 [PubMed Central] [PubMed] [Related articles]
10.
The crucial role of calibration in molecular date estimates for the peopling of the Americas.
Ho SY, Endicott P
Am J Hum Genet 2008 Jul, 83:142-6; author reply 146-7
 [PubMed Central] [PubMed] [Related articles]
11.
Rapid sequence change and geographical spread of human parvovirus B19: comparison of B19 virus evolution in acute and persistent infections.
Norja P, Eis-Hübinger AM, Söderlund-Venermo M, Hedman K, Simmonds P
J Virol 2008 Jul, 82:6427-33
 [PubMed Central] [PubMed] [Related articles]
12.
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes.
Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, Shidlovskiy F, Tikhonov A, Willerslev E, Iacumin P, Buigues B, Ericson PG, Germonpré M, Kosintsev P, Nikolaev V, Nowak-Kemp M, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC
Proc Natl Acad Sci U S A 2008 Jun 17, 105:8327-32
 [PubMed Central] [PubMed] [Related articles]
13.
Diversification of rice yellow mottle virus and related viruses spans the history of agriculture from the neolithic to the present.
Fargette D, Pinel-Galzi A, Sérémé D, Lacombe S, Hébrard E, Traoré O, Konaté G
PLoS Pathog 2008, 4:e1000125
 [PubMed Central] [PubMed] [Related articles]
14.
Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia.
Lam TT, Hon CC, Pybus OG, Kosakovsky Pond SL, Wong RT, Yip CW, Zeng F, Leung FC
PLoS Pathog 2008, 4:e1000130
 [PubMed Central] [PubMed] [Related articles]
15.
Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses.
Vijaykrishna D, Bahl J, Riley S, Duan L, Zhang JX, Chen H, Peiris JS, Smith GJ, Guan Y
PLoS Pathog 2008, 4:e1000161
 [PubMed Central] [PubMed] [Related articles]
16.
Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia.
Tee KK, Pybus OG, Li XJ, Han X, Shang H, Kamarulzaman A, Takebe Y
J Virol 2008 Sep, 82:9206-15
 [PubMed Central] [PubMed] [Related articles]
17.
Complete genome viral phylogenies suggests the concerted evolution of regulatory cores and accessory satellites.
de Andrade Zanotto PM, Krakauer DC
PLoS One 2008, 3:e3500
 [PubMed Central] [PubMed] [Related articles]
18.
New insight into the colonization processes of common voles: inferences from molecular and fossil evidence.
Tougard C, Renvoisé E, Petitjean A, Quéré JP
PLoS One 2008, 3:e3532
 [PubMed Central] [PubMed] [Related articles]
19.
Rabies virus in raccoons, Ohio, 2004.
Henderson JC, Biek R, Hanlon CA, O'Dee S, Real LA
Emerg Infect Dis 2008 Apr, 14:650-2
 [PubMed Central] [PubMed] [Related articles]
20.
Multiple virus lineages sharing recent common ancestry were associated with a Large Rift Valley fever outbreak among livestock in Kenya during 2006-2007.
Bird BH, Githinji JW, Macharia JM, Kasiiti JL, Muriithi RM, Gacheru SG, Musaa JO, Towner JS, Reeder SA, Oliver JB, Stevens TL, Erickson BR, Morgan LT, Khristova ML, Hartman AL, Comer JA, Rollin PE, Ksiazek TG, Nichol ST
J Virol 2008 Nov, 82:11152-66
 [PubMed Central] [PubMed] [Related articles]
21.
Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet.
Bon C, Caudy N, de Dieuleveult M, Fosse P, Philippe M, Maksud F, Beraud-Colomb E, Bouzaid E, Kefi R, Laugier C, Rousseau B, Casane D, van der Plicht J, Elalouf JM
Proc Natl Acad Sci U S A 2008 Nov 11, 105:17447-52
 [PubMed Central] [PubMed] [Related articles]
22.
Global distribution of novel rhinovirus genotype.
Briese T, Renwick N, Venter M, Jarman RG, Ghosh D, Köndgen S, Shrestha SK, Hoegh AM, Casas I, Adjogoua EV, Akoua-Koffi C, Myint KS, Williams DT, Chidlow G, van den Berg R, Calvo C, Koch O, Palacios G, Kapoor V, Villari J, Dominguez SR, Holmes KV, Harnett G, Smith D, Mackenzie JS, Ellerbrok H, Schweiger B, Schønning K, Chadha MS, Leendertz FH, Mishra AC, Gibbons RV, Holmes EC, Lipkin WI
Emerg Infect Dis 2008 Jun, 14:944-7
 [PubMed Central] [PubMed] [Related articles]
23.
Phylogenetic distributions of British birds of conservation concern.
Thomas GH
Proc Biol Sci 2008 Sep 22, 275:2077-83
 [PubMed Central] [PubMed] [Related articles]
24.
Mutualistic interactions drive ecological niche convergence in a diverse butterfly community.
Elias M, Gompert Z, Jiggins C, Willmott K
PLoS Biol 2008 Dec 2, 6:2642-9
 [PubMed Central] [PubMed] [Related articles]
25.
Density-dependent diversification in North American wood warblers.
Rabosky DL, Lovette IJ
Proc Biol Sci 2008 Oct 22, 275:2363-71
 [PubMed Central] [PubMed] [Related articles]
26.
Diversification of New Zealand weta (Orthoptera: Ensifera: Anostostomatidae) and their relationships in Australasia.
Pratt RC, Morgan-Richards M, Trewick SA
Philos Trans R Soc Lond B Biol Sci 2008 Oct 27, 363:3427-37
 [PubMed Central] [PubMed] [Related articles]
27.
Genome analysis of small-ruminant lentivirus genotype E: a caprine lentivirus with natural deletions of the dUTPase subunit, vpr-like accessory gene, and 70-base-pair repeat of the U3 region.
Reina R, Grego E, Bertolotti L, De Meneghi D, Rosati S
J Virol 2009 Jan, 83:1152-5
 [PubMed Central] [PubMed] [Related articles]
28.
Genetic history of hepatitis C virus in East Asia.
Pybus OG, Barnes E, Taggart R, Lemey P, Markov PV, Rasachak B, Syhavong B, Phetsouvanah R, Sheridan I, Humphreys IS, Lu L, Newton PN, Klenerman P
J Virol 2009 Jan, 83:1071-82
 [PubMed Central] [PubMed] [Related articles]
29.
How to summarize estimates of ancestral divergence times.
Morrison DA
Evol Bioinform Online 2008, 4:75-95
 [PubMed Central] [PubMed] [Related articles]
30.
The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records.
Peterson KJ, Cotton JA, Gehling JG, Pisani D
Philos Trans R Soc Lond B Biol Sci 2008 Apr 27, 363:1435-43
 [PubMed Central] [PubMed] [Related articles]
31.
Evolutionary dynamics of variant genomes of human papillomavirus types 18, 45, and 97.
Chen Z, DeSalle R, Schiffman M, Herrero R, Burk RD
J Virol 2009 Feb, 83:1443-55
 [PubMed Central] [PubMed] [Related articles]
32.
Contrasted patterns of hyperdiversification in Mediterranean hotspots.
Sauquet H, Weston PH, Anderson CL, Barker NP, Cantrill DJ, Mast AR, Savolainen V
Proc Natl Acad Sci U S A 2009 Jan 6, 106:221-5
 [PubMed Central] [PubMed] [Related articles]
33.
Transmission networks and population turnover of echovirus 30.
McWilliam Leitch EC, Bendig J, Cabrerizo M, Cardosa J, Hyypiä T, Ivanova OE, Kelly A, Kroes AC, Lukashev A, MacAdam A, McMinn P, Roivainen M, Trallero G, Evans DJ, Simmonds P
J Virol 2009 Mar, 83:2109-18
 [PubMed Central] [PubMed] [Related articles]
34.
Population dynamics and rates of molecular evolution of a recently emerged paramyxovirus, avian metapneumovirus subtype C.
Padhi A, Poss M
J Virol 2009 Feb, 83:2015-9
 [PubMed Central] [PubMed] [Related articles]
35.
Demonstration of sustained drug-resistant human immunodeficiency virus type 1 lineages circulating among treatment-naïve individuals.
Hué S, Gifford RJ, Dunn D, Fernhill E, Pillay D, UK Collaborative Group on HIV Drug Resistance
J Virol 2009 Mar, 83:2645-54
 [PubMed Central] [PubMed] [Related articles]
36.
Ecology, genetic diversity, and phylogeographic structure of andes virus in humans and rodents in Chile.
Medina RA, Torres-Perez F, Galeno H, Navarrete M, Vial PA, Palma RE, Ferres M, Cook JA, Hjelle B
J Virol 2009 Mar, 83:2446-59
 [PubMed Central] [PubMed] [Related articles]
37.
A Bayesian approach for evaluating the impact of historical events on rates of diversification.
Moore BR, Donoghue MJ
Proc Natl Acad Sci U S A 2009 Mar 17, 106:4307-12
 [PubMed Central] [PubMed] [Related articles]
38.
Is the new primate genus rungwecebus a baboon?
Zinner D, Arnold ML, Roos C
PLoS One 2009, 4:e4859
 [PubMed Central] [PubMed] [Related articles]
39.
Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants.
Abrahams MR, Anderson JA, Giorgi EE, Seoighe C, Mlisana K, Ping LH, Athreya GS, Treurnicht FK, Keele BF, Wood N, Salazar-Gonzalez JF, Bhattacharya T, Chu H, Hoffman I, Galvin S, Mapanje C, Kazembe P, Thebus R, Fiscus S, Hide W, Cohen MS, Karim SA, Haynes BF, Shaw GM, Hahn BH, Korber BT, Swanstrom R, Williamson C, CAPRISA Acute Infection Study Team , Center for HIV-AIDS Vaccine Immunology Consortium
J Virol 2009 Apr, 83:3556-67
 [PubMed Central] [PubMed] [Related articles]
40.
Genomic epidemiology of a dengue virus epidemic in urban Singapore.
Schreiber MJ, Holmes EC, Ong SH, Soh HS, Liu W, Tanner L, Aw PP, Tan HC, Ng LC, Leo YS, Low JG, Ong A, Ooi EE, Vasudevan SG, Hibberd ML
J Virol 2009 May, 83:4163-73
 [PubMed Central] [PubMed] [Related articles]
41.
Dengue virus serotype 2 from a sylvatic lineage isolated from a patient with dengue hemorrhagic Fever.
Cardosa J, Ooi MH, Tio PH, Perera D, Holmes EC, Bibi K, Abdul Manap Z
PLoS Negl Trop Dis 2009, 3:e423
 [PubMed Central] [PubMed] [Related articles]
42.
Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2.
Wertheim JO, Worobey M
PLoS Comput Biol 2009 May, 5:e1000377
 [PubMed Central] [PubMed] [Related articles]
43.
Genetic diversity of Toscana virus.
Collao X, Palacios G, Sanbonmatsu-Gámez S, Pérez-Ruiz M, Negredo AI, Navarro-Marí JM, Grandadam M, Aransay AM, Lipkin WI, Tenorio A, Sánchez-Seco MP
Emerg Infect Dis 2009 Apr, 15:574-7
 [PubMed Central] [PubMed] [Related articles]
44.
Hantavirus pulmonary syndrome, central plateau, southeastern, and southern Brazil.
Figueiredo LT, Moreli ML, de-Sousa RL, Borges AA, de-Figueiredo GG, Machado AM, Bisordi I, Nagasse-Sugahara TK, Suzuki A, Pereira LE, de-Souza RP, de-Souza LT, Braconi CT, Harsi CM, de-Andrade-Zanotto PM, Viral Diversity Genetic Network Consortium
Emerg Infect Dis 2009 Apr, 15:561-7
 [PubMed Central] [PubMed] [Related articles]
45.
Detection of novel SARS-like and other coronaviruses in bats from Kenya.
Tong S, Conrardy C, Ruone S, Kuzmin IV, Guo X, Tao Y, Niezgoda M, Haynes L, Agwanda B, Breiman RF, Anderson LJ, Rupprecht CE
Emerg Infect Dis 2009 Mar, 15:482-5
 [PubMed Central] [PubMed] [Related articles]
46.
Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses.
Dunham EJ, Dugan VG, Kaser EK, Perkins SE, Brown IH, Holmes EC, Taubenberger JK
J Virol 2009 Jun, 83:5485-94
 [PubMed Central] [PubMed] [Related articles]
47.
Elucidating geological and biological processes underlying the diversification of Sulawesi tarsiers.
Merker S, Driller C, Perwitasari-Farajallah D, Pamungkas J, Zischler H
Proc Natl Acad Sci U S A 2009 May 26, 106:8459-64
 [PubMed Central] [PubMed] [Related articles]
48.
Rapid response of a marine mammal species to holocene climate and habitat change.
de Bruyn M, Hall BL, Chauke LF, Baroni C, Koch PL, Hoelzel AR
PLoS Genet 2009 Jul, 5:e1000554
 [PubMed Central] [PubMed] [Related articles]
49.
Dating the emergence of pandemic influenza viruses.
Smith GJ, Bahl J, Vijaykrishna D, Zhang J, Poon LL, Chen H, Webster RG, Peiris JS, Guan Y
Proc Natl Acad Sci U S A 2009 Jul 14, 106:11709-12
 [PubMed Central] [PubMed] [Related articles]
50.
Ancient DNA resolves identity and phylogeny of New Zealand's extinct and living quail (Coturnix sp.).
Seabrook-Davison M, Huynen L, Lambert DM, Brunton DH
PLoS One 2009, 4:e6400
 [PubMed Central] [PubMed] [Related articles]
51.
Henipavirus RNA in African bats.
Drexler JF, Corman VM, Gloza-Rausch F, Seebens A, Annan A, Ipsen A, Kruppa T, Müller MA, Kalko EK, Adu-Sarkodie Y, Oppong S, Drosten C
PLoS One 2009, 4:e6367
 [PubMed Central] [PubMed] [Related articles]
52.
Dengue 1 diversity and microevolution, French polynesia 2001-2006: connection with epidemiology and clinics.
Descloux E, Cao-Lormeau VM, Roche C, De Lamballerie X
PLoS Negl Trop Dis 2009, 3:e493
 [PubMed Central] [PubMed] [Related articles]
53.
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates.
Alfaro ME, Santini F, Brock C, Alamillo H, Dornburg A, Rabosky DL, Carnevale G, Harmon LJ
Proc Natl Acad Sci U S A 2009 Aug 11, 106:13410-4
 [PubMed Central] [PubMed] [Related articles]
54.
The origin of malignant malaria.
Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JL, Pike BL, Rosenthal BM, Formenty P, Boesch C, Ayala FJ, Wolfe ND
Proc Natl Acad Sci U S A 2009 Sep 1, 106:14902-7
 [PubMed Central] [PubMed] [Related articles]
55.
A multilocus molecular phylogeny of the parrots (Psittaciformes): support for a Gondwanan origin during the cretaceous.
Wright TF, Schirtzinger EE, Matsumoto T, Eberhard JR, Graves GR, Sanchez JJ, Capelli S, Müller H, Scharpegge J, Chambers GK, Fleischer RC
Mol Biol Evol 2008 Oct, 25:2141-56
 [PubMed Central] [PubMed] [Related articles]
56.
Bayesian phylogeography finds its roots.
Lemey P, Rambaut A, Drummond AJ, Suchard MA
PLoS Comput Biol 2009 Sep, 5:e1000520
 [PubMed Central] [PubMed] [Related articles]
57.
Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.
Gray RR, Tatem AJ, Lamers S, Hou W, Laeyendecker O, Serwadda D, Sewankambo N, Gray RH, Wawer M, Quinn TC, Goodenow MM, Salemi M
AIDS 2009 Sep 10, 23:F9-F17
 [PubMed Central] [PubMed] [Related articles]
58.
Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom.
Hughes GJ, Fearnhill E, Dunn D, Lycett SJ, Rambaut A, Leigh Brown AJ, UK HIV Drug Resistance Collaboration
PLoS Pathog 2009 Sep, 5:e1000590
 [PubMed Central] [PubMed] [Related articles]
59.
Invasions by Eurasian avian influenza virus H6 genes and replacement of the virus' North American clade.
zu Dohna H, Li J, Cardona CJ, Miller J, Carpenter TE
Emerg Infect Dis 2009 Jul, 15:1040-5
 [PubMed Central] [PubMed] [Related articles]
60.
Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Areceaceae) identifies Syagrus as sister group of the coconut.
Meerow AW, Noblick L, Borrone JW, Couvreur TL, Mauro-Herrera M, Hahn WJ, Kuhn DN, Nakamura K, Oleas NH, Schnell RJ
PLoS One 2009, 4:e7353
 [PubMed Central] [PubMed] [Related articles]
61.
New genotype of dengue type 3 virus circulating in Brazil and Colombia showed a close relationship to old Asian viruses.
Aquino VH, Amarilla AA, Alfonso HL, Batista WC, Figueiredo LT
PLoS One 2009, 4:e7299
 [PubMed Central] [PubMed] [Related articles]
62.
Using Non-Homogeneous Models of Nucleotide Substitution to Identify Host Shift Events: Application to the Origin of the 1918 'Spanish' Influenza Pandemic Virus.
Dos Reis M, Hay AJ, Goldstein RA
J Mol Evol 2009 Sep 29, :
 [PubMed Central] [PubMed] [Related articles]
63.
Wheat domestication accelerated evolution and triggered positive selection in the beta-xylosidase enzyme of Mycosphaerella graminicola.
Brunner PC, Keller N, McDonald BA
PLoS One 2009, 4:e7884
 [PubMed Central] [PubMed] [Related articles]
64.
mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves.
Pang JF, Kluetsch C, Zou XJ, Zhang AB, Luo LY, Angleby H, Ardalan A, Ekström C, Sköllermo A, Lundeberg J, Matsumura S, Leitner T, Zhang YP, Savolainen P
Mol Biol Evol 2009 Dec, 26:2849-64
 [PubMed Central] [PubMed] [Related articles]

This article is also cited by 44 articles in BioMed Central


You can also check ISI Web of Science for additional citations (subscription required)
  
printer friendly 
to  [Help]
Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us
© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.