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PyCogent: a toolkit for making sense from sequence.
Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA
Genome Biol 2007, 8:R171
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1.	A core gut microbiome in obese and lean twins. Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI Nature 2009 Jan 22, 457:480-4 [PubMed Central] [PubMed] [Related articles]
2.	From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal. Smit S, Rother K, Heringa J, Knight R RNA 2008 Mar, 14:410-6 [PubMed Central] [PubMed] [Related articles]
3.	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Liu Z, DeSantis TZ, Andersen GL, Knight R Nucleic Acids Res 2008 Oct, 36:e120 [PubMed Central] [PubMed] [Related articles]
4.	Worlds within worlds: evolution of the vertebrate gut microbiota. Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI Nat Rev Microbiol 2008 Oct, 6:776-88 [PubMed Central] [PubMed] [Related articles]

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