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PyCogent: a toolkit for making sense from sequence.
Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA
Genome Biol 2007, 8:R171
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PubMed Central articles that cite the above article:

1.	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Liu Z, DeSantis TZ, Andersen GL, Knight R Nucleic Acids Res 2008 Oct, 36:e120 [PubMed Central] [PubMed] [Related articles]
2.	The convergence of carbohydrate active gene repertoires in human gut microbes. Lozupone CA, Hamady M, Cantarel BL, Coutinho PM, Henrissat B, Gordon JI, Knight R Proc Natl Acad Sci U S A 2008 Sep 30, 105:15076-81 [PubMed Central] [PubMed] [Related articles]
3.	Worlds within worlds: evolution of the vertebrate gut microbiota. Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI Nat Rev Microbiol 2008 Oct, 6:776-88 [PubMed Central] [PubMed] [Related articles]

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