Log on / register
Feedback | Support | My details
Using pyrosequencing to shed light on deep mine microbial ecology.
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC, Rohwer F
BMC Genomics 2006, 7:57
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

PubMed Central articles that cite the above article:

1.
Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes.
Eisen JA
PLoS Biol 2007 Mar, 5:e82
[PubMed Central] [PubMed] [Related articles]

2.
Analysis of read length limiting factors in Pyrosequencing chemistry.
Mashayekhi F, Ronaghi M
Anal Biochem 2007 Apr 15, 363:275-87
[PubMed Central] [PubMed] [Related articles]

3.
Subsurface microbial diversity in deep-granitic-fracture water in Colorado.
Sahl JW, Schmidt R, Swanner ED, Mandernack KW, Templeton AS, Kieft TL, Smith RL, Sanford WE, Callaghan RL, Mitton JB, Spear JR
Appl Environ Microbiol 2008 Jan, 74:143-52
[PubMed Central] [PubMed] [Related articles]

4.
Microbial ecology of four coral atolls in the Northern Line Islands.
Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F
PLoS One 2008, 3:e1584
[PubMed Central] [PubMed] [Related articles]

5.
Metagenomics: read length matters.
Wommack KE, Bhavsar J, Ravel J
Appl Environ Microbiol 2008 Mar, 74:1453-63
[PubMed Central] [PubMed] [Related articles]

6.
Phylogenetic classification of short environmental DNA fragments.
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J
Nucleic Acids Res 2008 Apr, 36:2230-9
[PubMed Central] [PubMed] [Related articles]

7.
Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics.
Pernthaler A, Dekas AE, Brown CT, Goffredi SK, Embaye T, Orphan VJ
Proc Natl Acad Sci U S A 2008 May 13, 105:7052-7
[PubMed Central] [PubMed] [Related articles]

8.
The minimum information about a genome sequence (MIGS) specification.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A
Nat Biotechnol 2008 May, 26:541-7
[PubMed Central] [PubMed] [Related articles]

9.
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment.
Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE, House CH
Proc Natl Acad Sci U S A 2008 Jul 29, 105:10583-8
[PubMed Central] [PubMed] [Related articles]

10.
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome.
Qu A, Brulc JM, Wilson MK, Law BF, Theoret JR, Joens LA, Konkel ME, Angly F, Dinsdale EA, Edwards RA, Nelson KE, White BA
PLoS One 2008, 3:e2945
[PubMed Central] [PubMed] [Related articles]

11.
Next-generation sequencing: applications beyond genomes.
Marguerat S, Wilhelm BT, Bähler J
Biochem Soc Trans 2008 Oct, 36:1091-6
[PubMed Central] [PubMed] [Related articles]

12.
A bioinformatician's guide to metagenomics.
Kunin V, Copeland A, Lapidus A, Mavromatis K, Hugenholtz P
Microbiol Mol Biol Rev 2008 Dec, 72:557-78, Table of Contents
[PubMed Central] [PubMed] [Related articles]

13.
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.
Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA
Proc Natl Acad Sci U S A 2009 Feb 10, 106:1948-53
[PubMed Central] [PubMed] [Related articles]

14.
Bioinformatics challenges of new sequencing technology.
Pop M, Salzberg SL
Trends Genet 2008 Mar, 24:142-9
[PubMed Central] [PubMed] [Related articles]

15.
Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition.
Schellenberg J, Links MG, Hill JE, Dumonceaux TJ, Peters GA, Tyler S, Ball TB, Severini A, Plummer FA
Appl Environ Microbiol 2009 May, 75:2889-98
[PubMed Central] [PubMed] [Related articles]

16.
The dynamic genetic repertoire of microbial communities.
Wilmes P, Simmons SL, Denef VJ, Banfield JF
FEMS Microbiol Rev 2009 Jan, 33:109-32
[PubMed Central] [PubMed] [Related articles]

17.
Achievements and new knowledge unraveled by metagenomic approaches.
Simon C, Daniel R
Appl Microbiol Biotechnol 2009 Sep 16, :
[PubMed Central] [PubMed] [Related articles]


This article is also cited by 11 articles in BioMed Central


You can also check ISI Web of Science for additional citations (subscription required)
printer friendly 
to  [Help]

© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.