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CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.
Huang J, Wei W, Chen J, Zhang J, Liu G, Di X, Mei R, Ishikawa S, Aburatani H, Jones KW, Shapero MH
BMC Bioinformatics
2006,
7
:83
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PubMed Central articles that cite the above article:
1.
Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.
Komura D, Shen F, Ishikawa S, Fitch KR, Chen W, Zhang J, Liu G, Ihara S, Nakamura H, Hurles ME, Lee C, Scherer SW, Jones KW, Shapero MH, Huang J, Aburatani H
Genome Res
2006 Dec,
16
:1575-84
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SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples.
Assié G, LaFramboise T, Platzer P, Bertherat J, Stratakis CA, Eng C
Am J Hum Genet
2008 Apr,
82
:903-15
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Free energy of DNA duplex formation on short oligonucleotide microarrays.
Zhang L, Wu C, Carta R, Zhao H
Nucleic Acids Res
2007,
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The application of single nucleotide polymorphism microarrays in cancer research.
Mao X, Young BD, Lu YJ
Curr Genomics
2007 Jun,
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Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data.
Göransson H, Edlund K, Rydåker M, Rasmussen M, Winquist J, Ekman S, Bergqvist M, Thomas A, Lambe M, Rosenquist R, Holmberg L, Micke P, Botling J, Isaksson A
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Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays.
Scharpf RB, Parmigiani G, Pevsner J, Ruczinski I
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Cancer gene discovery in mouse and man.
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Hybridization modeling of oligonucleotide SNP arrays for accurate DNA copy number estimation.
Wan L, Sun K, Ding Q, Cui Y, Li M, Wen Y, Elston RC, Qian M, Fu WJ
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QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
Colella S, Yau C, Taylor JM, Mirza G, Butler H, Clouston P, Bassett AS, Seller A, Holmes CC, Ragoussis J
Nucleic Acids Res
2007,
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Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays.
Yamamoto G, Nannya Y, Kato M, Sanada M, Levine RL, Kawamata N, Hangaishi A, Kurokawa M, Chiba S, Gilliland DG, Koeffler HP, Ogawa S
Am J Hum Genet
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11.
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data.
Nancarrow DJ, Handoko HY, Stark MS, Whiteman DC, Hayward NK
PLoS One
2007,
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12.
Estimating genome-wide copy number using allele-specific mixture models.
Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA
J Comput Biol
2008 Sep,
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