Log on / register
Feedback | Support | My details
Discovery of biological networks from diverse functional genomic data.
Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG
Genome Biol 2005, 6:R114
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

PubMed Central articles that cite the above article:

1.
Integrated assessment and prediction of transcription factor binding.
Beyer A, Workman C, Hollunder J, Radke D, Möller U, Wilhelm T, Ideker T
PLoS Comput Biol 2006 Jun 16, 2:e70
[PubMed Central] [PubMed] [Related articles]

2.
Assessing systems properties of yeast mitochondria through an interaction map of the organelle.
Perocchi F, Jensen LJ, Gagneur J, Ahting U, von Mering C, Bork P, Prokisch H, Steinmetz LM
PLoS Genet 2006 Oct 20, 2:e170
[PubMed Central] [PubMed] [Related articles]

3.
*** Unable to retrieve article 17054397 ***

[PubMed Central] [PubMed] [Related articles]

4.
Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies.
Haarer B, Viggiano S, Hibbs MA, Troyanskaya OG, Amberg DC
Genes Dev 2007 Jan 15, 21:148-59
[PubMed Central] [PubMed] [Related articles]

5.
Functional analysis of gene duplications in Saccharomyces cerevisiae.
Guan Y, Dunham MJ, Troyanskaya OG
Genetics 2007 Feb, 175:933-43
[PubMed Central] [PubMed] [Related articles]

6.
Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements.
Doh ST, Zhang Y, Temple MH, Cai L
BMC Bioinformatics 2007, 8:94
[PubMed Central] [PubMed] [Related articles]

7.
Regulation of rRNA synthesis by TATA-binding protein-associated factor Mot1.
Dasgupta A, Sprouse RO, French S, Aprikian P, Hontz R, Juedes SA, Smith JS, Beyer AL, Auble DT
Mol Cell Biol 2007 Apr, 27:2886-96
[PubMed Central] [PubMed] [Related articles]

8.
Network-based analysis of affected biological processes in type 2 diabetes models.
Liu M, Liberzon A, Kong SW, Lai WR, Park PJ, Kohane IS, Kasif S
PLoS Genet 2007 Jun, 3:e96
[PubMed Central] [PubMed] [Related articles]

9.
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae.
Lee I, Li Z, Marcotte EM
PLoS One 2007, 2:e988
[PubMed Central] [PubMed] [Related articles]

10.
*** Unable to retrieve article 17571924 ***

[PubMed Central] [PubMed] [Related articles]

11.
Novel roles for selected genes in meiotic DNA processing.
Jordan PW, Klein F, Leach DR
PLoS Genet 2007 Dec, 3:e222
[PubMed Central] [PubMed] [Related articles]

12.
*** Unable to retrieve article 18069899 ***

[PubMed Central] [PubMed] [Related articles]

13.
Influence of genotype and nutrition on survival and metabolism of starving yeast.
Boer VM, Amini S, Botstein D
Proc Natl Acad Sci U S A 2008 May 13, 105:6930-5
[PubMed Central] [PubMed] [Related articles]

14.
Predicting and validating protein interactions using network structure.
Chen PY, Deane CM, Reinert G
PLoS Comput Biol 2008, 4:e1000118
[PubMed Central] [PubMed] [Related articles]

15.
GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
Reimand J, Tooming L, Peterson H, Adler P, Vilo J
Nucleic Acids Res 2008 Jul 1, 36:W452-9
[PubMed Central] [PubMed] [Related articles]

16.
A genomewide functional network for the laboratory mouse.
Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG
PLoS Comput Biol 2008, 4:e1000165
[PubMed Central] [PubMed] [Related articles]

17.
Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions.
Qi Y, Suhail Y, Lin YY, Boeke JD, Bader JS
Genome Res 2008 Dec, 18:1991-2004
[PubMed Central] [PubMed] [Related articles]

18.
Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis.
Hess DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis BS, Nislow C, Giaever G, Costanzo M, Troyanskaya OG, Caudy AA
PLoS Genet 2009 Mar, 5:e1000407
[PubMed Central] [PubMed] [Related articles]

19.
Biomedical discovery acceleration, with applications to craniofacial development.
Leach SM, Tipney H, Feng W, Baumgartner WA, Kasliwal P, Schuyler RP, Williams T, Spritz RA, Hunter L
PLoS Comput Biol 2009 Mar, 5:e1000215
[PubMed Central] [PubMed] [Related articles]

20.
Directing experimental biology: a case study in mitochondrial biogenesis.
Hibbs MA, Myers CL, Huttenhower C, Hess DC, Li K, Caudy AA, Troyanskaya OG
PLoS Comput Biol 2009 Mar, 5:e1000322
[PubMed Central] [PubMed] [Related articles]

21.
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.
Hu P, Janga SC, Babu M, Díaz-Mejía JJ, Butland G, Yang W, Pogoutse O, Guo X, Phanse S, Wong P, Chandran S, Christopoulos C, Nazarians-Armavil A, Nasseri NK, Musso G, Ali M, Nazemof N, Eroukova V, Golshani A, Paccanaro A, Greenblatt JF, Moreno-Hagelsieb G, Emili A
PLoS Biol 2009 Apr 28, 7:e96
[PubMed Central] [PubMed] [Related articles]

22.
Assessing the functional structure of genomic data.
Huttenhower C, Troyanskaya OG
Bioinformatics 2008 Jul 1, 24:i330-8
[PubMed Central] [PubMed] [Related articles]

23.
Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity.
Yeger-Lotem E, Riva L, Su LJ, Gitler AD, Cashikar AG, King OD, Auluck PK, Geddie ML, Valastyan JS, Karger DR, Lindquist S, Fraenkel E
Nat Genet 2009 Mar, 41:316-23
[PubMed Central] [PubMed] [Related articles]

24.
The Modular Organization of Protein Interactions in Escherichia coli.
Peregrín-Alvarez JM, Xiong X, Su C, Parkinson J
PLoS Comput Biol 2009 Oct, 5:e1000523
[PubMed Central] [PubMed] [Related articles]

25.
Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases.
Pattin KA, Moore JH
Hum Genet 2008 Aug, 124:19-29
[PubMed Central] [PubMed] [Related articles]


This article is also cited by 19 articles in BioMed Central


You can also check ISI Web of Science for additional citations (subscription required)
  
printer friendly 
to  [Help]

© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.