Log on / register
Feedback | Support | My details
ErmineJ: tool for functional analysis of gene expression data sets.
Lee HK, Braynen W, Keshav K, Pavlidis P
BMC Bioinformatics 2005, 6:269
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]


printer friendly 
to  [Help]

PubMed Central articles that cite the above article:

1.
Iron regulation of the major virulence factors in the AIDS-associated pathogen Cryptococcus neoformans.
Jung WH, Sham A, White R, Kronstad JW
PLoS Biol 2006 Nov, 4:e410
[PubMed Central] [PubMed] [Related articles]

2.
*** Unable to retrieve article 17121456 ***

[PubMed Central] [PubMed] [Related articles]

3.
Interaction of Epe1 with the heterochromatin assembly pathway in Schizosaccharomyces pombe.
Isaac S, Walfridsson J, Zohar T, Lazar D, Kahan T, Ekwall K, Cohen A
Genetics 2007 Apr, 175:1549-60
[PubMed Central] [PubMed] [Related articles]

4.
Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human.
Leparc GG, Mitra RD
Nucleic Acids Res 2007, 35:3192-202
[PubMed Central] [PubMed] [Related articles]

5.
Extracting binary signals from microarray time-course data.
Sahoo D, Dill DL, Tibshirani R, Plevritis SK
Nucleic Acids Res 2007, 35:3705-12
[PubMed Central] [PubMed] [Related articles]

6.
Threshold-free high-power methods for the ontological analysis of genome-wide gene-expression studies.
Nilsson B, Håkansson P, Johansson M, Nelander S, Fioretos T
Genome Biol 2007, 8:R74
[PubMed Central] [PubMed] [Related articles]

7.
GeneTrail--advanced gene set enrichment analysis.
Backes C, Keller A, Kuentzer J, Kneissl B, Comtesse N, Elnakady YA, Müller R, Meese E, Lenhof HP
Nucleic Acids Res 2007 Jul, 35:W186-92
[PubMed Central] [PubMed] [Related articles]

8.
Computation of significance scores of unweighted Gene Set Enrichment Analyses.
Keller A, Backes C, Lenhof HP
BMC Bioinformatics 2007, 8:290
[PubMed Central] [PubMed] [Related articles]

9.
Gene expression in human hippocampus from cocaine abusers identifies genes which regulate extracellular matrix remodeling.
Mash DC, ffrench-Mullen J, Adi N, Qin Y, Buck A, Pablo J
PLoS One 2007, 2:e1187
[PubMed Central] [PubMed] [Related articles]

10.
Effect of synthetic dietary triglycerides: a novel research paradigm for nutrigenomics.
Sanderson LM, de Groot PJ, Hooiveld GJ, Koppen A, Kalkhoven E, Müller M, Kersten S
PLoS One 2008, 3:e1681
[PubMed Central] [PubMed] [Related articles]

11.
Identifying alternative hyper-splicing signatures in MG-thymoma by exon arrays.
Soreq L, Gilboa-Geffen A, Berrih-Aknin S, Lacoste P, Darvasi A, Soreq E, Bergman H, Soreq H
PLoS One 2008, 3:e2392
[PubMed Central] [PubMed] [Related articles]

12.
The Cladosporium fulvum virulence protein Avr2 inhibits host proteases required for basal defense.
van Esse HP, Van't Klooster JW, Bolton MD, Yadeta KA, van Baarlen P, Boeren S, Vervoort J, de Wit PJ, Thomma BP
Plant Cell 2008 Jul, 20:1948-63
[PubMed Central] [PubMed] [Related articles]

13.
Identification of Arx transcriptional targets in the developing basal forebrain.
Fulp CT, Cho G, Marsh ED, Nasrallah IM, Labosky PA, Golden JA
Hum Mol Genet 2008 Dec 1, 17:3740-60
[PubMed Central] [PubMed] [Related articles]

14.
Role of the molybdoflavoenzyme aldehyde oxidase homolog 2 in the biosynthesis of retinoic acid: generation and characterization of a knockout mouse.
Terao M, Kurosaki M, Barzago MM, Fratelli M, Bagnati R, Bastone A, Giudice C, Scanziani E, Mancuso A, Tiveron C, Garattini E
Mol Cell Biol 2009 Jan, 29:357-77
[PubMed Central] [PubMed] [Related articles]

15.
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Huang W, Sherman BT, Lempicki RA
Nucleic Acids Res 2009 Jan, 37:1-13
[PubMed Central] [PubMed] [Related articles]

16.
Transcriptomes in healthy and diseased gingival tissues.
Demmer RT, Behle JH, Wolf DL, Handfield M, Kebschull M, Celenti R, Pavlidis P, Papapanou PN
J Periodontol 2008 Nov, 79:2112-24
[PubMed Central] [PubMed] [Related articles]

17.
Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance.
van Baarlen P, Troost FJ, van Hemert S, van der Meer C, de Vos WM, de Groot PJ, Hooiveld GJ, Brummer RJ, Kleerebezem M
Proc Natl Acad Sci U S A 2009 Feb 17, 106:2371-6
[PubMed Central] [PubMed] [Related articles]

18.
Periodontal therapy alters gene expression of peripheral blood monocytes.
Papapanou PN, Sedaghatfar MH, Demmer RT, Wolf DL, Yang J, Roth GA, Celenti R, Belusko PB, Lalla E, Pavlidis P
J Clin Periodontol 2007 Sep, 34:736-47
[PubMed Central] [PubMed] [Related articles]

19.
Tissue specific profiling of females of Schistosoma japonicum by integrated laser microdissection microscopy and microarray analysis.
Gobert GN, McManus DP, Nawaratna S, Moertel L, Mulvenna J, Jones MK
PLoS Negl Trop Dis 2009, 3:e469
[PubMed Central] [PubMed] [Related articles]

20.
Global brain gene expression analysis links glutamatergic and GABAergic alterations to suicide and major depression.
Sequeira A, Mamdani F, Ernst C, Vawter MP, Bunney WE, Lebel V, Rehal S, Klempan T, Gratton A, Benkelfat C, Rouleau GA, Mechawar N, Turecki G
PLoS One 2009, 4:e6585
[PubMed Central] [PubMed] [Related articles]

21.
Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human.
Rakhshandehroo M, Hooiveld G, Müller M, Kersten S
PLoS One 2009, 4:e6796
[PubMed Central] [PubMed] [Related articles]

22.
Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes.
Chen X, Wang L, Smith JD, Zhang B
Bioinformatics 2008 Nov 1, 24:2474-81
[PubMed Central] [PubMed] [Related articles]

23.
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
Keller A, Backes C, Gerasch A, Kaufmann M, Kohlbacher O, Meese E, Lenhof HP
Bioinformatics 2009 Nov 1, 25:2787-94
[PubMed Central] [PubMed] [Related articles]


This article is also cited by 16 articles in BioMed Central


You can also check ISI Web of Science for additional citations (subscription required)
  
printer friendly 
to  [Help]

© 1999-2009 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.